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L1TD1 (LINE1 type transposase domain containing 1)

Identity

Alias_symbol (synonym)FLJ10884
ECAT11
Other alias
HGNC (Hugo) L1TD1
LocusID (NCBI) 54596
Atlas_Id 52622
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 62194802 and ends at 62212328 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)L1TD1   25595
Cards
Entrez_Gene (NCBI)L1TD1  54596  LINE1 type transposase domain containing 1
AliasesECAT11
GeneCards (Weizmann)L1TD1
Ensembl hg19 (Hinxton)ENSG00000240563 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240563 [Gene_View]  chr1:62194802-62212328 [Contig_View]  L1TD1 [Vega]
ICGC DataPortalENSG00000240563
TCGA cBioPortalL1TD1
AceView (NCBI)L1TD1
Genatlas (Paris)L1TD1
WikiGenes54596
SOURCE (Princeton)L1TD1
Genetics Home Reference (NIH)L1TD1
Genomic and cartography
GoldenPath hg38 (UCSC)L1TD1  -     chr1:62194802-62212328 +  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)L1TD1  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblL1TD1 - 1p31.3 [CytoView hg19]  L1TD1 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBIL1TD1 [Mapview hg19]  L1TD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB211065 AK001746 AK001973 AL834314 BC012555
RefSeq transcript (Entrez)NM_001164835 NM_019079
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)L1TD1
Cluster EST : UnigeneHs.685462 [ NCBI ]
CGAP (NCI)Hs.685462
Alternative Splicing GalleryENSG00000240563
Gene ExpressionL1TD1 [ NCBI-GEO ]   L1TD1 [ EBI - ARRAY_EXPRESS ]   L1TD1 [ SEEK ]   L1TD1 [ MEM ]
Gene Expression Viewer (FireBrowse)L1TD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54596
GTEX Portal (Tissue expression)L1TD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7N2
Splice isoforms : SwissVarQ5T7N2
PhosPhoSitePlusQ5T7N2
Domains : Interpro (EBI)Transposase_22   
Domain families : Pfam (Sanger)Transposase_22 (PF02994)   
Domain families : Pfam (NCBI)pfam02994   
Conserved Domain (NCBI)L1TD1
DMDM Disease mutations54596
Blocks (Seattle)L1TD1
PDB (SRS)2LR6    3SOO   
PDB (PDBSum)2LR6    3SOO   
PDB (IMB)2LR6    3SOO   
PDB (RSDB)2LR6    3SOO   
Structural Biology KnowledgeBase2LR6    3SOO   
SCOP (Structural Classification of Proteins)2LR6    3SOO   
CATH (Classification of proteins structures)2LR6    3SOO   
SuperfamilyQ5T7N2
Human Protein AtlasENSG00000240563
Peptide AtlasQ5T7N2
HPRD07708
IPIIPI00253050   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7N2
IntAct (EBI)Q5T7N2
FunCoupENSG00000240563
BioGRIDL1TD1
STRING (EMBL)L1TD1
ZODIACL1TD1
Ontologies - Pathways
QuickGOQ5T7N2
Ontology : AmiGOsingle-stranded RNA binding  intracellular ribonucleoprotein complex  transposition, RNA-mediated  
Ontology : EGO-EBIsingle-stranded RNA binding  intracellular ribonucleoprotein complex  transposition, RNA-mediated  
NDEx NetworkL1TD1
Atlas of Cancer Signalling NetworkL1TD1
Wikipedia pathwaysL1TD1
Orthology - Evolution
OrthoDB54596
GeneTree (enSembl)ENSG00000240563
Phylogenetic Trees/Animal Genes : TreeFamL1TD1
HOVERGENQ5T7N2
HOGENOMQ5T7N2
Homologs : HomoloGeneL1TD1
Homology/Alignments : Family Browser (UCSC)L1TD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerL1TD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)L1TD1
dbVarL1TD1
ClinVarL1TD1
1000_GenomesL1TD1 
Exome Variant ServerL1TD1
ExAC (Exome Aggregation Consortium)L1TD1 (select the gene name)
Genetic variants : HAPMAP54596
Genomic Variants (DGV)L1TD1 [DGVbeta]
DECIPHERL1TD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisL1TD1 
Mutations
ICGC Data PortalL1TD1 
TCGA Data PortalL1TD1 
Broad Tumor PortalL1TD1
OASIS PortalL1TD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICL1TD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDL1TD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch L1TD1
DgiDB (Drug Gene Interaction Database)L1TD1
DoCM (Curated mutations)L1TD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)L1TD1 (select a term)
intoGenL1TD1
Cancer3DL1TD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenL1TD1
Genetic Testing Registry L1TD1
NextProtQ5T7N2 [Medical]
TSGene54596
GENETestsL1TD1
Huge Navigator L1TD1 [HugePedia]
snp3D : Map Gene to Disease54596
BioCentury BCIQL1TD1
ClinGenL1TD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54596
Chemical/Pharm GKB GenePA145008170
Clinical trialL1TD1
Miscellaneous
canSAR (ICR)L1TD1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineL1TD1
EVEXL1TD1
GoPubMedL1TD1
iHOPL1TD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:22:03 CEST 2017

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