Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

L3MBTL4 (l(3)mbt-like 4 (Drosophila))

Identity

Other namesHsT1031
HGNC (Hugo) L3MBTL4
LocusID (NCBI) 91133
Atlas_Id 51835
Location 18p11.31
Location_base_pair Starts at 5954705 and ends at 6414910 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
ADNP2 18q23 / L3MBTL4 18p11.31L3MBTL4 18p11.31 / LAMA1 18p11.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)L3MBTL4   26677
Cards
Entrez_Gene (NCBI)L3MBTL4  91133  l(3)mbt-like 4 (Drosophila)
GeneCards (Weizmann)L3MBTL4
Ensembl hg19 (Hinxton)ENSG00000154655 [Gene_View]  chr18:5954705-6414910 [Contig_View]  L3MBTL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154655 [Gene_View]  chr18:5954705-6414910 [Contig_View]  L3MBTL4 [Vega]
ICGC DataPortalENSG00000154655
TCGA cBioPortalL3MBTL4
AceView (NCBI)L3MBTL4
Genatlas (Paris)L3MBTL4
WikiGenes91133
SOURCE (Princeton)L3MBTL4
Genomic and cartography
GoldenPath hg19 (UCSC)L3MBTL4  -     chr18:5954705-6414910 -  18p11.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)L3MBTL4  -     18p11.31   [Description]    (hg38-Dec_2013)
EnsemblL3MBTL4 - 18p11.31 [CytoView hg19]  L3MBTL4 - 18p11.31 [CytoView hg38]
Mapping of homologs : NCBIL3MBTL4 [Mapview hg19]  L3MBTL4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026733 AK091075 AK093255 AK098363 BC039316
RefSeq transcript (Entrez)NM_173464
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)L3MBTL4
Cluster EST : UnigeneHs.683795 [ NCBI ]
CGAP (NCI)Hs.683795
Alternative Splicing : Fast-db (Paris)GSHG0014177
Alternative Splicing GalleryENSG00000154655
Gene ExpressionL3MBTL4 [ NCBI-GEO ]     L3MBTL4 [ SEEK ]   L3MBTL4 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)91133
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA19 (Uniprot)
NextProtQ8NA19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA19
Splice isoforms : SwissVarQ8NA19 (Swissvar)
PhosPhoSitePlusQ8NA19
Domaine pattern : Prosite (Expaxy)MBT (PS51079)    SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)Mbt    SAM    SAM/pointed    SAM_type1    Znf_C2HC   
Domain families : Pfam (Sanger)MBT (PF02820)    SAM_1 (PF00536)    zf-C2HC (PF01530)   
Domain families : Pfam (NCBI)pfam02820    pfam00536    pfam01530   
Domain families : Smart (EMBL)MBT (SM00561)  SAM (SM00454)  
DMDM Disease mutations91133
Blocks (Seattle)L3MBTL4
Human Protein AtlasENSG00000154655
Peptide AtlasQ8NA19
HPRD08198
IPIIPI00300393   IPI00473138   IPI00789760   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA19
IntAct (EBI)Q8NA19
FunCoupENSG00000154655
BioGRIDL3MBTL4
IntegromeDBL3MBTL4
STRING (EMBL)L3MBTL4
ZODIACL3MBTL4
Ontologies - Pathways
QuickGOQ8NA19
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  chromatin modification  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  chromatin modification  
Protein Interaction DatabaseL3MBTL4
Atlas of Cancer Signalling NetworkL3MBTL4
Wikipedia pathwaysL3MBTL4
Orthology - Evolution
OrthoDB91133
GeneTree (enSembl)ENSG00000154655
Phylogenetic Trees/Animal Genes : TreeFamL3MBTL4
Homologs : HomoloGeneL3MBTL4
Homology/Alignments : Family Browser (UCSC)L3MBTL4
Gene fusions - Rearrangements
Fusion: TCGAADNP2 18q23 L3MBTL4 18p11.31 BRCA
Fusion: TCGAL3MBTL4 18p11.31 LAMA1 18p11.31 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerL3MBTL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)L3MBTL4
dbVarL3MBTL4
ClinVarL3MBTL4
1000_GenomesL3MBTL4 
Exome Variant ServerL3MBTL4
Exome Aggregation Consortium (ExAC)ENSG00000154655
SNP (GeneSNP Utah)L3MBTL4
SNP : HGBaseL3MBTL4
Genetic variants : HAPMAPL3MBTL4
Genomic Variants (DGV)L3MBTL4 [DGVbeta]
Mutations
ICGC Data PortalL3MBTL4 
TCGA Data PortalL3MBTL4 
Tumor PortalL3MBTL4
TCGA Copy Number PortalL3MBTL4
Somatic Mutations in Cancer : COSMICL3MBTL4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch L3MBTL4
DgiDB (Drug Gene Interaction Database)L3MBTL4
DoCM (Curated mutations)L3MBTL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)L3MBTL4 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)18:5954705-6414910
CONAN: Copy Number AnalysisL3MBTL4 
Mutations and Diseases : HGMDL3MBTL4
OMIM
MedgenL3MBTL4
NextProtQ8NA19 [Medical]
TSGene91133
GENETestsL3MBTL4
Huge Navigator L3MBTL4 [HugePedia]  L3MBTL4 [HugeCancerGEM]
snp3D : Map Gene to Disease91133
BioCentury BCIQL3MBTL4
General knowledge
Chemical/Protein Interactions : CTD91133
Chemical/Pharm GKB GenePA134935795
Clinical trialL3MBTL4
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineL3MBTL4
GoPubMedL3MBTL4
iHOPL3MBTL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jan 16 18:54:01 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.