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LACC1 (laccase (multicopper oxidoreductase) domain containing 1)

Identity

Alias_namesC13orf31
chromosome 13 open reading frame 31
laccase (multicopper oxidoreductase) domain containing 1
Alias_symbol (synonym)FLJ38725
FAMIN
Other alias
HGNC (Hugo) LACC1
LocusID (NCBI) 144811
Atlas_Id 65156
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 44453420 and ends at 44468068 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LACC1   26789
Cards
Entrez_Gene (NCBI)LACC1  144811  laccase (multicopper oxidoreductase) domain containing 1
AliasesC13orf31
GeneCards (Weizmann)LACC1
Ensembl hg19 (Hinxton)ENSG00000179630 [Gene_View]  chr13:44453420-44468068 [Contig_View]  LACC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179630 [Gene_View]  chr13:44453420-44468068 [Contig_View]  LACC1 [Vega]
ICGC DataPortalENSG00000179630
TCGA cBioPortalLACC1
AceView (NCBI)LACC1
Genatlas (Paris)LACC1
WikiGenes144811
SOURCE (Princeton)LACC1
Genetics Home Reference (NIH)LACC1
Genomic and cartography
GoldenPath hg19 (UCSC)LACC1  -     chr13:44453420-44468068 +  13q14.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LACC1  -     13q14.11   [Description]    (hg38-Dec_2013)
EnsemblLACC1 - 13q14.11 [CytoView hg19]  LACC1 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBILACC1 [Mapview hg19]  LACC1 [Mapview hg38]
OMIM613409   
Gene and transcription
Genbank (Entrez)AK096044 BC035749 BX503941 BX538036 DA332005
RefSeq transcript (Entrez)NM_001128303 NM_153218
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)LACC1
Cluster EST : UnigeneHs.210586 [ NCBI ]
CGAP (NCI)Hs.210586
Alternative Splicing GalleryENSG00000179630
Gene ExpressionLACC1 [ NCBI-GEO ]   LACC1 [ EBI - ARRAY_EXPRESS ]   LACC1 [ SEEK ]   LACC1 [ MEM ]
Gene Expression Viewer (FireBrowse)LACC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144811
GTEX Portal (Tissue expression)LACC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV20
Splice isoforms : SwissVarQ8IV20
PhosPhoSitePlusQ8IV20
Domains : Interpro (EBI)Cu_polyphenol_OxRdtase_Laccase    Cytotoxic_necrot_fac-like_cat   
Domain families : Pfam (Sanger)Cu-oxidase_4 (PF02578)   
Domain families : Pfam (NCBI)pfam02578   
Conserved Domain (NCBI)LACC1
DMDM Disease mutations144811
Blocks (Seattle)LACC1
SuperfamilyQ8IV20
Human Protein AtlasENSG00000179630
Peptide AtlasQ8IV20
HPRD08793
IPIIPI00292688   IPI00797298   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV20
IntAct (EBI)Q8IV20
FunCoupENSG00000179630
BioGRIDLACC1
STRING (EMBL)LACC1
ZODIACLACC1
Ontologies - Pathways
QuickGOQ8IV20
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLACC1
Atlas of Cancer Signalling NetworkLACC1
Wikipedia pathwaysLACC1
Orthology - Evolution
OrthoDB144811
GeneTree (enSembl)ENSG00000179630
Phylogenetic Trees/Animal Genes : TreeFamLACC1
HOVERGENQ8IV20
HOGENOMQ8IV20
Homologs : HomoloGeneLACC1
Homology/Alignments : Family Browser (UCSC)LACC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLACC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LACC1
dbVarLACC1
ClinVarLACC1
1000_GenomesLACC1 
Exome Variant ServerLACC1
ExAC (Exome Aggregation Consortium)LACC1 (select the gene name)
Genetic variants : HAPMAP144811
Genomic Variants (DGV)LACC1 [DGVbeta]
DECIPHER (Syndromes)13:44453420-44468068  ENSG00000179630
CONAN: Copy Number AnalysisLACC1 
Mutations
ICGC Data PortalLACC1 
TCGA Data PortalLACC1 
Broad Tumor PortalLACC1
OASIS PortalLACC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLACC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LACC1
DgiDB (Drug Gene Interaction Database)LACC1
DoCM (Curated mutations)LACC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LACC1 (select a term)
intoGenLACC1
Cancer3DLACC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613409   
Orphanet11711   
MedgenLACC1
Genetic Testing Registry LACC1
NextProtQ8IV20 [Medical]
TSGene144811
GENETestsLACC1
Huge Navigator LACC1 [HugePedia]
snp3D : Map Gene to Disease144811
BioCentury BCIQLACC1
ClinGenLACC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144811
Chemical/Pharm GKB GenePA147358522
Clinical trialLACC1
Miscellaneous
canSAR (ICR)LACC1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLACC1
EVEXLACC1
GoPubMedLACC1
iHOPLACC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:42 CET 2017

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