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LACTB (lactamase beta)

Identity

Alias_namesMRPL56
mitochondrial ribosomal protein L56
Alias_symbol (synonym)FLJ14902
Other aliasG24
HGNC (Hugo) LACTB
LocusID (NCBI) 114294
Atlas_Id 65158
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 63121800 and ends at 63131471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LACTB (15q22.2) / GTF3C3 (2q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LACTB   16468
Cards
Entrez_Gene (NCBI)LACTB  114294  lactamase beta
AliasesG24; MRPL56
GeneCards (Weizmann)LACTB
Ensembl hg19 (Hinxton)ENSG00000103642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103642 [Gene_View]  chr15:63121800-63131471 [Contig_View]  LACTB [Vega]
ICGC DataPortalENSG00000103642
TCGA cBioPortalLACTB
AceView (NCBI)LACTB
Genatlas (Paris)LACTB
WikiGenes114294
SOURCE (Princeton)LACTB
Genetics Home Reference (NIH)LACTB
Genomic and cartography
GoldenPath hg38 (UCSC)LACTB  -     chr15:63121800-63131471 +  15q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LACTB  -     15q22.2   [Description]    (hg19-Feb_2009)
EnsemblLACTB - 15q22.2 [CytoView hg19]  LACTB - 15q22.2 [CytoView hg38]
Mapping of homologs : NCBILACTB [Mapview hg19]  LACTB [Mapview hg38]
OMIM608440   
Gene and transcription
Genbank (Entrez)AA186367 AI621121 AK027808 AY358709 BC037198
RefSeq transcript (Entrez)NM_001288585 NM_032857 NM_171846
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LACTB
Cluster EST : UnigeneHs.410388 [ NCBI ]
CGAP (NCI)Hs.410388
Alternative Splicing GalleryENSG00000103642
Gene ExpressionLACTB [ NCBI-GEO ]   LACTB [ EBI - ARRAY_EXPRESS ]   LACTB [ SEEK ]   LACTB [ MEM ]
Gene Expression Viewer (FireBrowse)LACTB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114294
GTEX Portal (Tissue expression)LACTB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP83111   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP83111  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP83111
Splice isoforms : SwissVarP83111
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   
PhosPhoSitePlusP83111
Domains : Interpro (EBI)Beta-lactam-related    Beta-lactam/transpept-like   
Domain families : Pfam (Sanger)Beta-lactamase (PF00144)   
Domain families : Pfam (NCBI)pfam00144   
Conserved Domain (NCBI)LACTB
DMDM Disease mutations114294
Blocks (Seattle)LACTB
SuperfamilyP83111
Human Protein AtlasENSG00000103642
Peptide AtlasP83111
HPRD07466
IPIIPI00294186   IPI00375490   
Protein Interaction databases
DIP (DOE-UCLA)P83111
IntAct (EBI)P83111
FunCoupENSG00000103642
BioGRIDLACTB
STRING (EMBL)LACTB
ZODIACLACTB
Ontologies - Pathways
QuickGOP83111
Ontology : AmiGOmitochondrion  cytosol  hydrolase activity  
Ontology : EGO-EBImitochondrion  cytosol  hydrolase activity  
NDEx NetworkLACTB
Atlas of Cancer Signalling NetworkLACTB
Wikipedia pathwaysLACTB
Orthology - Evolution
OrthoDB114294
GeneTree (enSembl)ENSG00000103642
Phylogenetic Trees/Animal Genes : TreeFamLACTB
HOVERGENP83111
HOGENOMP83111
Homologs : HomoloGeneLACTB
Homology/Alignments : Family Browser (UCSC)LACTB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLACTB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LACTB
dbVarLACTB
ClinVarLACTB
1000_GenomesLACTB 
Exome Variant ServerLACTB
ExAC (Exome Aggregation Consortium)LACTB (select the gene name)
Genetic variants : HAPMAP114294
Genomic Variants (DGV)LACTB [DGVbeta]
DECIPHERLACTB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLACTB 
Mutations
ICGC Data PortalLACTB 
TCGA Data PortalLACTB 
Broad Tumor PortalLACTB
OASIS PortalLACTB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLACTB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLACTB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LACTB
DgiDB (Drug Gene Interaction Database)LACTB
DoCM (Curated mutations)LACTB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LACTB (select a term)
intoGenLACTB
Cancer3DLACTB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608440   
Orphanet
MedgenLACTB
Genetic Testing Registry LACTB
NextProtP83111 [Medical]
TSGene114294
GENETestsLACTB
Target ValidationLACTB
Huge Navigator LACTB [HugePedia]
snp3D : Map Gene to Disease114294
BioCentury BCIQLACTB
ClinGenLACTB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114294
Chemical/Pharm GKB GenePA30262
Clinical trialLACTB
Miscellaneous
canSAR (ICR)LACTB (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLACTB
EVEXLACTB
GoPubMedLACTB
iHOPLACTB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:30 CEST 2017

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