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LACTB2 (lactamase beta 2)

Identity

Alias_symbol (synonym)CGI-83
Other alias
HGNC (Hugo) LACTB2
LocusID (NCBI) 51110
Atlas_Id 54417
Location 8q13.3  [Link to chromosome band 8q13]
Location_base_pair Starts at 71549501 and ends at 71581447 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LACTB2 (8q13.3) / XKR9 (8q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LACTB2   18512
Cards
Entrez_Gene (NCBI)LACTB2  51110  lactamase beta 2
AliasesCGI-83
GeneCards (Weizmann)LACTB2
Ensembl hg19 (Hinxton)ENSG00000147592 [Gene_View]  chr8:71549501-71581447 [Contig_View]  LACTB2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147592 [Gene_View]  chr8:71549501-71581447 [Contig_View]  LACTB2 [Vega]
ICGC DataPortalENSG00000147592
TCGA cBioPortalLACTB2
AceView (NCBI)LACTB2
Genatlas (Paris)LACTB2
WikiGenes51110
SOURCE (Princeton)LACTB2
Genetics Home Reference (NIH)LACTB2
Genomic and cartography
GoldenPath hg19 (UCSC)LACTB2  -     chr8:71549501-71581447 -  8q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LACTB2  -     8q13.3   [Description]    (hg38-Dec_2013)
EnsemblLACTB2 - 8q13.3 [CytoView hg19]  LACTB2 - 8q13.3 [CytoView hg38]
Mapping of homologs : NCBILACTB2 [Mapview hg19]  LACTB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151841 AK222699 AK290201 BC000878 BC008505
RefSeq transcript (Entrez)NM_016027
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)LACTB2
Cluster EST : UnigeneHs.118554 [ NCBI ]
CGAP (NCI)Hs.118554
Alternative Splicing GalleryENSG00000147592
Gene ExpressionLACTB2 [ NCBI-GEO ]   LACTB2 [ EBI - ARRAY_EXPRESS ]   LACTB2 [ SEEK ]   LACTB2 [ MEM ]
Gene Expression Viewer (FireBrowse)LACTB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51110
GTEX Portal (Tissue expression)LACTB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53H82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53H82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53H82
Splice isoforms : SwissVarQ53H82
PhosPhoSitePlusQ53H82
Domains : Interpro (EBI)Metallo-B-lactamas   
Domain families : Pfam (Sanger)Lactamase_B (PF00753)   
Domain families : Pfam (NCBI)pfam00753   
Domain families : Smart (EMBL)Lactamase_B (SM00849)  
Conserved Domain (NCBI)LACTB2
DMDM Disease mutations51110
Blocks (Seattle)LACTB2
PDB (SRS)4AD9   
PDB (PDBSum)4AD9   
PDB (IMB)4AD9   
PDB (RSDB)4AD9   
Structural Biology KnowledgeBase4AD9   
SCOP (Structural Classification of Proteins)4AD9   
CATH (Classification of proteins structures)4AD9   
SuperfamilyQ53H82
Human Protein AtlasENSG00000147592
Peptide AtlasQ53H82
HPRD13955
IPIIPI00006952   
Protein Interaction databases
DIP (DOE-UCLA)Q53H82
IntAct (EBI)Q53H82
FunCoupENSG00000147592
BioGRIDLACTB2
STRING (EMBL)LACTB2
ZODIACLACTB2
Ontologies - Pathways
QuickGOQ53H82
Ontology : AmiGOprotein binding  mitochondrion  metabolic process  hydrolase activity  metal ion binding  
Ontology : EGO-EBIprotein binding  mitochondrion  metabolic process  hydrolase activity  metal ion binding  
NDEx NetworkLACTB2
Atlas of Cancer Signalling NetworkLACTB2
Wikipedia pathwaysLACTB2
Orthology - Evolution
OrthoDB51110
GeneTree (enSembl)ENSG00000147592
Phylogenetic Trees/Animal Genes : TreeFamLACTB2
HOVERGENQ53H82
HOGENOMQ53H82
Homologs : HomoloGeneLACTB2
Homology/Alignments : Family Browser (UCSC)LACTB2
Gene fusions - Rearrangements
Fusion : MitelmanLACTB2/XKR9 [8q13.3/8q13.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLACTB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LACTB2
dbVarLACTB2
ClinVarLACTB2
1000_GenomesLACTB2 
Exome Variant ServerLACTB2
ExAC (Exome Aggregation Consortium)LACTB2 (select the gene name)
Genetic variants : HAPMAP51110
Genomic Variants (DGV)LACTB2 [DGVbeta]
DECIPHER (Syndromes)8:71549501-71581447  ENSG00000147592
CONAN: Copy Number AnalysisLACTB2 
Mutations
ICGC Data PortalLACTB2 
TCGA Data PortalLACTB2 
Broad Tumor PortalLACTB2
OASIS PortalLACTB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLACTB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLACTB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LACTB2
DgiDB (Drug Gene Interaction Database)LACTB2
DoCM (Curated mutations)LACTB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LACTB2 (select a term)
intoGenLACTB2
Cancer3DLACTB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLACTB2
Genetic Testing Registry LACTB2
NextProtQ53H82 [Medical]
TSGene51110
GENETestsLACTB2
Huge Navigator LACTB2 [HugePedia]
snp3D : Map Gene to Disease51110
BioCentury BCIQLACTB2
ClinGenLACTB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51110
Chemical/Pharm GKB GenePA134952605
Clinical trialLACTB2
Miscellaneous
canSAR (ICR)LACTB2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLACTB2
EVEXLACTB2
GoPubMedLACTB2
iHOPLACTB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:06:38 CEST 2017

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