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LACTBL1 (lactamase beta like 1)

Identity

Other alias-
HGNC (Hugo) LACTBL1
LocusID (NCBI) 646262
Atlas_Id 65159
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 22953043 and ends at 22965430 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LACTBL1   35445
Cards
Entrez_Gene (NCBI)LACTBL1  646262  lactamase beta like 1
Aliases
GeneCards (Weizmann)LACTBL1
Ensembl hg19 (Hinxton)ENSG00000215906 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215906 [Gene_View]  chr1:22953043-22965430 [Contig_View]  LACTBL1 [Vega]
ICGC DataPortalENSG00000215906
TCGA cBioPortalLACTBL1
AceView (NCBI)LACTBL1
Genatlas (Paris)LACTBL1
WikiGenes646262
SOURCE (Princeton)LACTBL1
Genetics Home Reference (NIH)LACTBL1
Genomic and cartography
GoldenPath hg38 (UCSC)LACTBL1  -     chr1:22953043-22965430 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LACTBL1  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblLACTBL1 - 1p36.12 [CytoView hg19]  LACTBL1 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBILACTBL1 [Mapview hg19]  LACTBL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001289974
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LACTBL1
Alternative Splicing GalleryENSG00000215906
Gene ExpressionLACTBL1 [ NCBI-GEO ]   LACTBL1 [ EBI - ARRAY_EXPRESS ]   LACTBL1 [ SEEK ]   LACTBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LACTBL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646262
GTEX Portal (Tissue expression)LACTBL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MY62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MY62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MY62
Splice isoforms : SwissVarA8MY62
PhosPhoSitePlusA8MY62
Domains : Interpro (EBI)Beta-lactam-related    Beta-lactam/transpept-like   
Domain families : Pfam (Sanger)Beta-lactamase (PF00144)   
Domain families : Pfam (NCBI)pfam00144   
Conserved Domain (NCBI)LACTBL1
DMDM Disease mutations646262
Blocks (Seattle)LACTBL1
SuperfamilyA8MY62
Human Protein AtlasENSG00000215906
Peptide AtlasA8MY62
IPIIPI00873576   IPI01025112   
Protein Interaction databases
DIP (DOE-UCLA)A8MY62
IntAct (EBI)A8MY62
FunCoupENSG00000215906
BioGRIDLACTBL1
STRING (EMBL)LACTBL1
ZODIACLACTBL1
Ontologies - Pathways
QuickGOA8MY62
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLACTBL1
Atlas of Cancer Signalling NetworkLACTBL1
Wikipedia pathwaysLACTBL1
Orthology - Evolution
OrthoDB646262
GeneTree (enSembl)ENSG00000215906
Phylogenetic Trees/Animal Genes : TreeFamLACTBL1
HOVERGENA8MY62
HOGENOMA8MY62
Homologs : HomoloGeneLACTBL1
Homology/Alignments : Family Browser (UCSC)LACTBL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLACTBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LACTBL1
dbVarLACTBL1
ClinVarLACTBL1
1000_GenomesLACTBL1 
Exome Variant ServerLACTBL1
ExAC (Exome Aggregation Consortium)LACTBL1 (select the gene name)
Genetic variants : HAPMAP646262
Genomic Variants (DGV)LACTBL1 [DGVbeta]
DECIPHERLACTBL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLACTBL1 
Mutations
ICGC Data PortalLACTBL1 
TCGA Data PortalLACTBL1 
Broad Tumor PortalLACTBL1
OASIS PortalLACTBL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLACTBL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LACTBL1
DgiDB (Drug Gene Interaction Database)LACTBL1
DoCM (Curated mutations)LACTBL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LACTBL1 (select a term)
intoGenLACTBL1
Cancer3DLACTBL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLACTBL1
Genetic Testing Registry LACTBL1
NextProtA8MY62 [Medical]
TSGene646262
GENETestsLACTBL1
Target ValidationLACTBL1
Huge Navigator LACTBL1 [HugePedia]
snp3D : Map Gene to Disease646262
BioCentury BCIQLACTBL1
ClinGenLACTBL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646262
Chemical/Pharm GKB GenePA165751480
Clinical trialLACTBL1
Miscellaneous
canSAR (ICR)LACTBL1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLACTBL1
EVEXLACTBL1
GoPubMedLACTBL1
iHOPLACTBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:29 CEST 2017

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