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LAD1 (ladinin 1)

Identity

Other aliasLadA
HGNC (Hugo) LAD1
LocusID (NCBI) 3898
Atlas_Id 65160
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201380838 and ends at 201399541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LAD1 (1q32.1) / LAD1 (1q32.1)LAD1 (1q32.1) / PPP2R1B (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LAD1   6472
Cards
Entrez_Gene (NCBI)LAD1  3898  ladinin 1
AliasesLadA
GeneCards (Weizmann)LAD1
Ensembl hg19 (Hinxton)ENSG00000159166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159166 [Gene_View]  chr1:201380838-201399541 [Contig_View]  LAD1 [Vega]
ICGC DataPortalENSG00000159166
TCGA cBioPortalLAD1
AceView (NCBI)LAD1
Genatlas (Paris)LAD1
WikiGenes3898
SOURCE (Princeton)LAD1
Genetics Home Reference (NIH)LAD1
Genomic and cartography
GoldenPath hg38 (UCSC)LAD1  -     chr1:201380838-201399541 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LAD1  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblLAD1 - 1q32.1 [CytoView hg19]  LAD1 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBILAD1 [Mapview hg19]  LAD1 [Mapview hg38]
OMIM602314   
Gene and transcription
Genbank (Entrez)AK310917 AK313388 BC009742 BC071890 BX647307
RefSeq transcript (Entrez)NM_005558
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LAD1
Cluster EST : UnigeneHs.519035 [ NCBI ]
CGAP (NCI)Hs.519035
Alternative Splicing GalleryENSG00000159166
Gene ExpressionLAD1 [ NCBI-GEO ]   LAD1 [ EBI - ARRAY_EXPRESS ]   LAD1 [ SEEK ]   LAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3898
GTEX Portal (Tissue expression)LAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00515   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00515  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00515
Splice isoforms : SwissVarO00515
PhosPhoSitePlusO00515
Domains : Interpro (EBI)Ladinin_1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LAD1
DMDM Disease mutations3898
Blocks (Seattle)LAD1
SuperfamilyO00515
Human Protein AtlasENSG00000159166
Peptide AtlasO00515
HPRD03815
IPIIPI00514234   IPI00910275   IPI00965974   
Protein Interaction databases
DIP (DOE-UCLA)O00515
IntAct (EBI)O00515
FunCoupENSG00000159166
BioGRIDLAD1
STRING (EMBL)LAD1
ZODIACLAD1
Ontologies - Pathways
QuickGOO00515
Ontology : AmiGOstructural molecule activity  basement membrane  cadherin binding  extracellular exosome  
Ontology : EGO-EBIstructural molecule activity  basement membrane  cadherin binding  extracellular exosome  
NDEx NetworkLAD1
Atlas of Cancer Signalling NetworkLAD1
Wikipedia pathwaysLAD1
Orthology - Evolution
OrthoDB3898
GeneTree (enSembl)ENSG00000159166
Phylogenetic Trees/Animal Genes : TreeFamLAD1
HOVERGENO00515
HOGENOMO00515
Homologs : HomoloGeneLAD1
Homology/Alignments : Family Browser (UCSC)LAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LAD1
dbVarLAD1
ClinVarLAD1
1000_GenomesLAD1 
Exome Variant ServerLAD1
ExAC (Exome Aggregation Consortium)LAD1 (select the gene name)
Genetic variants : HAPMAP3898
Genomic Variants (DGV)LAD1 [DGVbeta]
DECIPHERLAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLAD1 
Mutations
ICGC Data PortalLAD1 
TCGA Data PortalLAD1 
Broad Tumor PortalLAD1
OASIS PortalLAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch LAD1
DgiDB (Drug Gene Interaction Database)LAD1
DoCM (Curated mutations)LAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LAD1 (select a term)
intoGenLAD1
Cancer3DLAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602314   
Orphanet
MedgenLAD1
Genetic Testing Registry LAD1
NextProtO00515 [Medical]
TSGene3898
GENETestsLAD1
Target ValidationLAD1
Huge Navigator LAD1 [HugePedia]
snp3D : Map Gene to Disease3898
BioCentury BCIQLAD1
ClinGenLAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3898
Chemical/Pharm GKB GenePA30263
Clinical trialLAD1
Miscellaneous
canSAR (ICR)LAD1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLAD1
EVEXLAD1
GoPubMedLAD1
iHOPLAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:30 CEST 2017

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