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LAIR1 (leukocyte associated immunoglobulin like receptor 1)

Identity

Alias_namesleukocyte-associated Ig-like receptor 1
leukocyte-associated immunoglobulin-like receptor 1
Alias_symbol (synonym)CD305
Other aliasLAIR-1
HGNC (Hugo) LAIR1
LocusID (NCBI) 3903
Atlas_Id 51428
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54865233 and ends at 54876721 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GCN1 (12q24.23) / LAIR1 (19q13.42)LAIR1 (19q13.42) / LOC388796 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LAIR1   6477
Cards
Entrez_Gene (NCBI)LAIR1  3903  leukocyte associated immunoglobulin like receptor 1
AliasesCD305; LAIR-1
GeneCards (Weizmann)LAIR1
Ensembl hg19 (Hinxton)ENSG00000167613 [Gene_View]  chr19:54865233-54876721 [Contig_View]  LAIR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167613 [Gene_View]  chr19:54865233-54876721 [Contig_View]  LAIR1 [Vega]
ICGC DataPortalENSG00000167613
TCGA cBioPortalLAIR1
AceView (NCBI)LAIR1
Genatlas (Paris)LAIR1
WikiGenes3903
SOURCE (Princeton)LAIR1
Genetics Home Reference (NIH)LAIR1
Genomic and cartography
GoldenPath hg19 (UCSC)LAIR1  -     chr19:54865233-54876721 -  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LAIR1  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblLAIR1 - 19q13.42 [CytoView hg19]  LAIR1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBILAIR1 [Mapview hg19]  LAIR1 [Mapview hg38]
OMIM602992   
Gene and transcription
Genbank (Entrez)AF013249 AF109683 AF251509 AF251510 AK093559
RefSeq transcript (Entrez)NM_001289023 NM_001289025 NM_001289026 NM_001289027 NM_002287 NM_021706 NM_021708
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NT_187693 NW_003571055 NW_003571060 NW_003571061 NW_004929415
Consensus coding sequences : CCDS (NCBI)LAIR1
Cluster EST : UnigeneHs.572535 [ NCBI ]
CGAP (NCI)Hs.572535
Alternative Splicing GalleryENSG00000167613
Gene ExpressionLAIR1 [ NCBI-GEO ]   LAIR1 [ EBI - ARRAY_EXPRESS ]   LAIR1 [ SEEK ]   LAIR1 [ MEM ]
Gene Expression Viewer (FireBrowse)LAIR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3903
GTEX Portal (Tissue expression)LAIR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6GTX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6GTX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6GTX8
Splice isoforms : SwissVarQ6GTX8
PhosPhoSitePlusQ6GTX8
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)LAIR1
DMDM Disease mutations3903
Blocks (Seattle)LAIR1
PDB (SRS)3KGR    3RP1   
PDB (PDBSum)3KGR    3RP1   
PDB (IMB)3KGR    3RP1   
PDB (RSDB)3KGR    3RP1   
Structural Biology KnowledgeBase3KGR    3RP1   
SCOP (Structural Classification of Proteins)3KGR    3RP1   
CATH (Classification of proteins structures)3KGR    3RP1   
SuperfamilyQ6GTX8
Human Protein AtlasENSG00000167613
Peptide AtlasQ6GTX8
HPRD04292
IPIIPI00433028   IPI00028015   IPI00657756   IPI00788236   IPI00657811   IPI00916339   IPI00657684   IPI00853403   IPI01013167   IPI01014282   IPI01014816   IPI00892796   IPI01026068   IPI00893986   IPI00853170   
Protein Interaction databases
DIP (DOE-UCLA)Q6GTX8
IntAct (EBI)Q6GTX8
FunCoupENSG00000167613
BioGRIDLAIR1
STRING (EMBL)LAIR1
ZODIACLAIR1
Ontologies - Pathways
QuickGOQ6GTX8
Ontology : AmiGOadaptive immune response  protein binding  plasma membrane  plasma membrane  integral component of membrane  regulation of immune response  extracellular exosome  
Ontology : EGO-EBIadaptive immune response  protein binding  plasma membrane  plasma membrane  integral component of membrane  regulation of immune response  extracellular exosome  
NDEx NetworkLAIR1
Atlas of Cancer Signalling NetworkLAIR1
Wikipedia pathwaysLAIR1
Orthology - Evolution
OrthoDB3903
GeneTree (enSembl)ENSG00000167613
Phylogenetic Trees/Animal Genes : TreeFamLAIR1
HOVERGENQ6GTX8
HOGENOMQ6GTX8
Homologs : HomoloGeneLAIR1
Homology/Alignments : Family Browser (UCSC)LAIR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLAIR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LAIR1
dbVarLAIR1
ClinVarLAIR1
1000_GenomesLAIR1 
Exome Variant ServerLAIR1
ExAC (Exome Aggregation Consortium)LAIR1 (select the gene name)
Genetic variants : HAPMAP3903
Genomic Variants (DGV)LAIR1 [DGVbeta]
DECIPHER (Syndromes)19:54865233-54876721  ENSG00000167613
CONAN: Copy Number AnalysisLAIR1 
Mutations
ICGC Data PortalLAIR1 
TCGA Data PortalLAIR1 
Broad Tumor PortalLAIR1
OASIS PortalLAIR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLAIR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLAIR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LAIR1
DgiDB (Drug Gene Interaction Database)LAIR1
DoCM (Curated mutations)LAIR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LAIR1 (select a term)
intoGenLAIR1
Cancer3DLAIR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602992   
Orphanet
MedgenLAIR1
Genetic Testing Registry LAIR1
NextProtQ6GTX8 [Medical]
TSGene3903
GENETestsLAIR1
Huge Navigator LAIR1 [HugePedia]
snp3D : Map Gene to Disease3903
BioCentury BCIQLAIR1
ClinGenLAIR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3903
Chemical/Pharm GKB GenePA30266
Clinical trialLAIR1
Miscellaneous
canSAR (ICR)LAIR1 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLAIR1
EVEXLAIR1
GoPubMedLAIR1
iHOPLAIR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:24 CET 2017

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