Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LALBA (lactalbumin alpha)

Identity

Alias_nameslactalbumin
Alias_symbol (synonym)LYZL7
Other aliasLYZG
HGNC (Hugo) LALBA
LocusID (NCBI) 3906
Atlas_Id 43605
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 48567684 and ends at 48570046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LALBA   6480
Cards
Entrez_Gene (NCBI)LALBA  3906  lactalbumin alpha
AliasesLYZG
GeneCards (Weizmann)LALBA
Ensembl hg19 (Hinxton)ENSG00000167531 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167531 [Gene_View]  ENSG00000167531 [Sequence]  chr12:48567684-48570046 [Contig_View]  LALBA [Vega]
ICGC DataPortalENSG00000167531
TCGA cBioPortalLALBA
AceView (NCBI)LALBA
Genatlas (Paris)LALBA
WikiGenes3906
SOURCE (Princeton)LALBA
Genetics Home Reference (NIH)LALBA
Genomic and cartography
GoldenPath hg38 (UCSC)LALBA  -     chr12:48567684-48570046 -  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LALBA  -     12q13.11   [Description]    (hg19-Feb_2009)
EnsemblLALBA - 12q13.11 [CytoView hg19]  LALBA - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBILALBA [Mapview hg19]  LALBA [Mapview hg38]
OMIM149750   
Gene and transcription
Genbank (Entrez)BC069103 BC112316 BC112318 BX281629 CR541987
RefSeq transcript (Entrez)NM_002289
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LALBA
Cluster EST : UnigeneHs.72938 [ NCBI ]
CGAP (NCI)Hs.72938
Alternative Splicing GalleryENSG00000167531
Gene ExpressionLALBA [ NCBI-GEO ]   LALBA [ EBI - ARRAY_EXPRESS ]   LALBA [ SEEK ]   LALBA [ MEM ]
Gene Expression Viewer (FireBrowse)LALBA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3906
GTEX Portal (Tissue expression)LALBA
Human Protein AtlasENSG00000167531-LALBA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00709   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP00709  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00709
Splice isoforms : SwissVarP00709
PhosPhoSitePlusP00709
Domaine pattern : Prosite (Expaxy)LACTALBUMIN_LYSOZYME_1 (PS00128)    LACTALBUMIN_LYSOZYME_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_CS    Lactalbumin    Lysozyme-like_dom_sf   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)LALBA
DMDM Disease mutations3906
Blocks (Seattle)LALBA
PDB (SRS)1A4V    1B9O    1CB3    1HML    3B0I    3B0O    4L41   
PDB (PDBSum)1A4V    1B9O    1CB3    1HML    3B0I    3B0O    4L41   
PDB (IMB)1A4V    1B9O    1CB3    1HML    3B0I    3B0O    4L41   
PDB (RSDB)1A4V    1B9O    1CB3    1HML    3B0I    3B0O    4L41   
Structural Biology KnowledgeBase1A4V    1B9O    1CB3    1HML    3B0I    3B0O    4L41   
SCOP (Structural Classification of Proteins)1A4V    1B9O    1CB3    1HML    3B0I    3B0O    4L41   
CATH (Classification of proteins structures)1A4V    1B9O    1CB3    1HML    3B0I    3B0O    4L41   
SuperfamilyP00709
Human Protein Atlas [tissue]ENSG00000167531-LALBA [tissue]
Peptide AtlasP00709
HPRD01024
IPIIPI00019524   IPI01020794   
Protein Interaction databases
DIP (DOE-UCLA)P00709
IntAct (EBI)P00709
FunCoupENSG00000167531
BioGRIDLALBA
STRING (EMBL)LALBA
ZODIACLALBA
Ontologies - Pathways
QuickGOP00709
Ontology : AmiGOGolgi membrane  lactose synthase activity  calcium ion binding  extracellular space  Golgi lumen  lactose biosynthetic process  apoptotic process  signal transduction  cell-cell signaling  defense response to bacterium  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  
Ontology : EGO-EBIGolgi membrane  lactose synthase activity  calcium ion binding  extracellular space  Golgi lumen  lactose biosynthetic process  apoptotic process  signal transduction  cell-cell signaling  defense response to bacterium  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  
Pathways : KEGGGalactose metabolism   
NDEx NetworkLALBA
Atlas of Cancer Signalling NetworkLALBA
Wikipedia pathwaysLALBA
Orthology - Evolution
OrthoDB3906
GeneTree (enSembl)ENSG00000167531
Phylogenetic Trees/Animal Genes : TreeFamLALBA
HOVERGENP00709
HOGENOMP00709
Homologs : HomoloGeneLALBA
Homology/Alignments : Family Browser (UCSC)LALBA
Gene fusions - Rearrangements
Fusion : QuiverLALBA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLALBA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LALBA
dbVarLALBA
ClinVarLALBA
1000_GenomesLALBA 
Exome Variant ServerLALBA
ExAC (Exome Aggregation Consortium)ENSG00000167531
GNOMAD BrowserENSG00000167531
Varsome BrowserLALBA
Genetic variants : HAPMAP3906
Genomic Variants (DGV)LALBA [DGVbeta]
DECIPHERLALBA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLALBA 
Mutations
ICGC Data PortalLALBA 
TCGA Data PortalLALBA 
Broad Tumor PortalLALBA
OASIS PortalLALBA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLALBA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLALBA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LALBA
DgiDB (Drug Gene Interaction Database)LALBA
DoCM (Curated mutations)LALBA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LALBA (select a term)
intoGenLALBA
Cancer3DLALBA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM149750   
Orphanet
DisGeNETLALBA
MedgenLALBA
Genetic Testing Registry LALBA
NextProtP00709 [Medical]
TSGene3906
GENETestsLALBA
Target ValidationLALBA
Huge Navigator LALBA [HugePedia]
snp3D : Map Gene to Disease3906
BioCentury BCIQLALBA
ClinGenLALBA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3906
Chemical/Pharm GKB GenePA30269
Clinical trialLALBA
Miscellaneous
canSAR (ICR)LALBA (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLALBA
EVEXLALBA
GoPubMedLALBA
iHOPLALBA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:15:47 CET 2018
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