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LAMC3 (laminin, gamma 3)

Identity

Other namesOCCM
HGNC (Hugo) LAMC3
LocusID (NCBI) 10319
Location 9q34.12
Location_base_pair Starts at 133884504 and ends at 133968446 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LAMC3   6494
Entrez_Gene (NCBI)LAMC3  10319  laminin, gamma 3
Cards
GeneCards (Weizmann)LAMC3
Ensembl (Hinxton)ENSG00000050555 [Gene_View]  chr9:133884504-133968446 [Contig_View]  LAMC3 [Vega]
AceView (NCBI)LAMC3
Genatlas (Paris)LAMC3
SOURCE (Stanford)NM_006059
Genomic and cartography
GoldenPath (UCSC)LAMC3  -  9q34.12   chr9:133884504-133968446 +  9q34.12   [Description]    (hg19-Feb_2009)
EnsemblLAMC3 - 9q34.12 [CytoView]
Mapping of homologs : NCBILAMC3 [Mapview]
OMIM604349   614115   
Gene and transcription
Genbank (Entrez)AB208887 AF041835 AK075536 AL133595 AL551493
RefSeq transcript (SRS)NM_006059
RefSeq transcript (Entrez)NM_006059
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NG_029800 NT_035014 NW_001839240 NW_004078059
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_029800 NT_035014 NW_001839240 NW_004078059
Consensus coding sequences : CCDS (NCBI)LAMC3
Cluster EST : UnigeneHs.201805 [ SRS ] Hs.201805 [ NCBI ]
CGAP (NCI)Hs.201805
Alternative Splicing : Fast-db (Paris)GSHG0030524
Alternative Splicing GalleryENSG00000050555
Gene ExpressionLAMC3 [ NCBI-GEO ]   LAMC3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N6 (SRS) Q9Y6N6 (Uniprot)
NextProtQ9Y6N6
With graphics : InterProQ9Y6N6
Splice isoforms : SwissVarQ9Y6N6(Swissvar)
Domaine pattern : Prosite (SRS)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    LAMININ_IVA (PS51115)    LAMININ_NTER (PS51117)   
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    LAMININ_IVA (PS51115)    LAMININ_NTER (PS51117)   
Domains : Interpro (SRS)EGF_laminin    Laminin_B_type_IV    Laminin_N   
Domains : Interpro (EBI)EGF_laminin    Laminin_B_type_IV    Laminin_N   
Related proteins : CluSTrQ9Y6N6
Domain families : Pfam (SRS)Laminin_B (PF00052)    Laminin_EGF (PF00053)    Laminin_N (PF00055)   
Domain families : Pfam (Sanger)Laminin_B (PF00052)    Laminin_EGF (PF00053)    Laminin_N (PF00055)   
Domain families : Pfam (NCBI)pfam00052    pfam00053    pfam00055   
Domain families : Smart (EMBL)EGF_Lam (SM00180)  LamNT (SM00136)  
DMDM10319
Blocks (Seattle)Q9Y6N6
Human Protein AtlasENSG00000050555
HPRD05069
IPIIPI00178273   IPI00914899   IPI00641172   IPI00383802   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N6
IntAct (EBI)Q9Y6N6
FunCoupENSG00000050555
REACTOMELAMC3
Protein Interaction Database10319
BioGRIDLAMC3
InParanoidQ9Y6N6
Interologous Interaction database Q9Y6N6
IntegromeDBLAMC3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LAMC3
SNP (GeneSNP Utah)LAMC3
SNP : HGBaseLAMC3
Genetic variants : HAPMAPLAMC3
Somatic Mutations in Cancer : COSMICLAMC3 
CONAN: Copy Number AnalysisLAMC3 
Mutations and Diseases : HGMDLAMC3
OMIM604349    614115   
GENETests604349    614115   
Disease Genetic AssociationLAMC3
Huge Navigator LAMC3 [HugePedia]  LAMC3 [HugeCancerGEM]
Genomic VariantsLAMC3  LAMC3 [DGVbeta]
snp3D : Map Gene to Disease10319
General knowledge
Homologs : HomoloGeneLAMC3
Homology/Alignments : Family Browser (UCSC)LAMC3
Phylogenetic Trees/Animal Genes : TreeFamLAMC3
Chemical/Protein Interactions : CTD10319
Chemical/Pharm GKB GenePA30282
Clinical trialLAMC3
Cancer Resource (Charite)ENSG00000050555
Ontology : AmiGOcell morphogenesis involved in differentiation  structural molecule activity  extracellular region  proteinaceous extracellular matrix  basement membrane  cell adhesion  visual perception  astrocyte development  membrane  retina development in camera-type eye  
Ontology : EGO-EBIcell morphogenesis involved in differentiation  structural molecule activity  extracellular region  proteinaceous extracellular matrix  basement membrane  cell adhesion  visual perception  astrocyte development  membrane  retina development in camera-type eye  
Pathways : KEGGCell CommunicationECM-receptor interactionFocal adhesion
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneLAMC3
iHOPLAMC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:40:56 CEST 2013
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