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LAMP2 (lysosomal-associated membrane protein 2)

Identity

Other namesCD107b
LAMP-2
LAMPB
LGP110
HGNC (Hugo) LAMP2
LocusID (NCBI) 3920
Location Xq24
Location_base_pair Starts at 119560003 and ends at 119603204 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LAMP2   6501
Entrez_Gene (NCBI)LAMP2  3920  lysosomal-associated membrane protein 2
Cards
GeneCards (Weizmann)LAMP2
Ensembl (Hinxton)ENSG00000005893 [Gene_View]  chrX:119560003-119603204 [Contig_View]  LAMP2 [Vega]
AceView (NCBI)LAMP2
Genatlas (Paris)LAMP2
SOURCE (Stanford)NM_001122606 NM_002294 NM_013995
Genomic and cartography
GoldenPath (UCSC)LAMP2  -  Xq24   chrX:119560003-119603204 -  Xq24   [Description]    (hg19-Feb_2009)
EnsemblLAMP2 - Xq24 [CytoView]
Mapping of homologs : NCBILAMP2 [Mapview]
OMIM300257   309060   
Gene and transcription
Genbank (Entrez)AK291090 AK293931 AK295038 AK304405 AY561849
RefSeq transcript (SRS)NM_001122606 NM_002294 NM_013995
RefSeq transcript (Entrez)NM_001122606 NM_002294 NM_013995
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_007995 NT_011786 NW_001842396 NW_004078125
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_007995 NT_011786 NW_001842396 NW_004078125
Consensus coding sequences : CCDS (NCBI)LAMP2
Cluster EST : UnigeneHs.496684 [ SRS ] Hs.496684 [ NCBI ]
CGAP (NCI)Hs.496684
Alternative Splicing : Fast-db (Paris)GSHG0032305
Alternative Splicing GalleryENSG00000005893
Gene ExpressionLAMP2 [ NCBI-GEO ]   LAMP2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13473 (SRS) P13473 (Uniprot)
NextProtP13473
With graphics : InterProP13473
Splice isoforms : SwissVarP13473(Swissvar)
Domaine pattern : Prosite (SRS)LAMP_1 (PS00310)    LAMP_2 (PS00311)    LAMP_3 (PS51407)   
Domaine pattern : Prosite (Expaxy)LAMP_1 (PS00310)    LAMP_2 (PS00311)    LAMP_3 (PS51407)   
Domains : Interpro (SRS)LAMP_CS    Lysosome-assoc_membr_glycop   
Domains : Interpro (EBI)LAMP_CS    Lysosome-assoc_membr_glycop   
Related proteins : CluSTrP13473
Domain families : Pfam (SRS)Lamp (PF01299)   
Domain families : Pfam (Sanger)Lamp (PF01299)   
Domain families : Pfam (NCBI)pfam01299   
DMDM3920
Blocks (Seattle)P13473
Human Protein AtlasENSG00000005893
HPRD02396
IPIIPI00009030   IPI00739827   IPI00910397   IPI00980890   IPI00922445   IPI00216172   
Protein Interaction databases
DIP (DOE-UCLA)P13473
IntAct (EBI)P13473
FunCoupENSG00000005893
REACTOMELAMP2
Protein Interaction Database3920
BioGRIDLAMP2
InParanoidP13473
Interologous Interaction database P13473
IntegromeDBLAMP2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LAMP2
SNP (GeneSNP Utah)LAMP2
SNP : HGBaseLAMP2
Genetic variants : HAPMAPLAMP2
Somatic Mutations in Cancer : COSMICLAMP2 
CONAN: Copy Number AnalysisLAMP2 
Mutations and Diseases : HGMDLAMP2
OMIM300257    309060   
GENETests300257    309060   
Disease Genetic AssociationLAMP2
Huge Navigator LAMP2 [HugePedia]  LAMP2 [HugeCancerGEM]
Genomic VariantsLAMP2  LAMP2 [DGVbeta]
snp3D : Map Gene to Disease3920
General knowledge
Homologs : HomoloGeneLAMP2
Homology/Alignments : Family Browser (UCSC)LAMP2
Phylogenetic Trees/Animal Genes : TreeFamLAMP2
Chemical/Protein Interactions : CTD3920
Chemical/Pharm GKB GenePA30285
Clinical trialLAMP2
Cancer Resource (Charite)ENSG00000005893
Ontology : AmiGOplatelet degranulation  lysosome  lysosomal membrane  late endosome  plasma membrane  blood coagulation  membrane  integral to membrane  platelet activation  phagocytic vesicle membrane  platelet dense granule membrane  platelet dense granule membrane  late endosome membrane  
Ontology : EGO-EBIplatelet degranulation  lysosome  lysosomal membrane  late endosome  plasma membrane  blood coagulation  membrane  integral to membrane  platelet activation  phagocytic vesicle membrane  platelet dense granule membrane  platelet dense granule membrane  late endosome membrane  
Other databases
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
PubGeneLAMP2
iHOPLAMP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:29 CEST 2013
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