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LAMP5 (lysosomal associated membrane protein family member 5)

Identity

Alias_namesC20orf103
chromosome 20 open reading frame 103
lysosomal-associated membrane protein family, member 5
Alias_symbol (synonym)dJ1119D9.3
BAD-LAMP
UNC-46
Other aliasBADLAMP
LAMP-5
HGNC (Hugo) LAMP5
LocusID (NCBI) 24141
Atlas_Id 65165
Location 20p12.2  [Link to chromosome band 20p12]
Location_base_pair Starts at 9514358 and ends at 9530524 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LAMP5   16097
Cards
Entrez_Gene (NCBI)LAMP5  24141  lysosomal associated membrane protein family member 5
AliasesBAD-LAMP; BADLAMP; C20orf103; LAMP-5; 
UNC-46
GeneCards (Weizmann)LAMP5
Ensembl hg19 (Hinxton)ENSG00000125869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125869 [Gene_View]  chr20:9514358-9530524 [Contig_View]  LAMP5 [Vega]
ICGC DataPortalENSG00000125869
TCGA cBioPortalLAMP5
AceView (NCBI)LAMP5
Genatlas (Paris)LAMP5
WikiGenes24141
SOURCE (Princeton)LAMP5
Genetics Home Reference (NIH)LAMP5
Genomic and cartography
GoldenPath hg38 (UCSC)LAMP5  -     chr20:9514358-9530524 +  20p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LAMP5  -     20p12.2   [Description]    (hg19-Feb_2009)
EnsemblLAMP5 - 20p12.2 [CytoView hg19]  LAMP5 - 20p12.2 [CytoView hg38]
Mapping of homologs : NCBILAMP5 [Mapview hg19]  LAMP5 [Mapview hg38]
OMIM614641   
Gene and transcription
Genbank (Entrez)AK295336 AK316114 AL121740 BC050727 BG707942
RefSeq transcript (Entrez)NM_001199897 NM_012261
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LAMP5
Cluster EST : UnigeneHs.22920 [ NCBI ]
CGAP (NCI)Hs.22920
Alternative Splicing GalleryENSG00000125869
Gene ExpressionLAMP5 [ NCBI-GEO ]   LAMP5 [ EBI - ARRAY_EXPRESS ]   LAMP5 [ SEEK ]   LAMP5 [ MEM ]
Gene Expression Viewer (FireBrowse)LAMP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24141
GTEX Portal (Tissue expression)LAMP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJQ1
Splice isoforms : SwissVarQ9UJQ1
PhosPhoSitePlusQ9UJQ1
Domaine pattern : Prosite (Expaxy)LAMP_1 (PS00310)   
Domains : Interpro (EBI)Lysosome-assoc_membr_glycop   
Domain families : Pfam (Sanger)Lamp (PF01299)   
Domain families : Pfam (NCBI)pfam01299   
Conserved Domain (NCBI)LAMP5
DMDM Disease mutations24141
Blocks (Seattle)LAMP5
SuperfamilyQ9UJQ1
Human Protein AtlasENSG00000125869
Peptide AtlasQ9UJQ1
HPRD12736
IPIIPI00016848   IPI00929214   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJQ1
IntAct (EBI)Q9UJQ1
FunCoupENSG00000125869
BioGRIDLAMP5
STRING (EMBL)LAMP5
ZODIACLAMP5
Ontologies - Pathways
QuickGOQ9UJQ1
Ontology : AmiGOplasma membrane  endosome membrane  integral component of membrane  dendrite  cytoplasmic vesicle membrane  early endosome membrane  growth cone membrane  dendrite membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  recycling endosome membrane  
Ontology : EGO-EBIplasma membrane  endosome membrane  integral component of membrane  dendrite  cytoplasmic vesicle membrane  early endosome membrane  growth cone membrane  dendrite membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  recycling endosome membrane  
NDEx NetworkLAMP5
Atlas of Cancer Signalling NetworkLAMP5
Wikipedia pathwaysLAMP5
Orthology - Evolution
OrthoDB24141
GeneTree (enSembl)ENSG00000125869
Phylogenetic Trees/Animal Genes : TreeFamLAMP5
HOVERGENQ9UJQ1
HOGENOMQ9UJQ1
Homologs : HomoloGeneLAMP5
Homology/Alignments : Family Browser (UCSC)LAMP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLAMP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LAMP5
dbVarLAMP5
ClinVarLAMP5
1000_GenomesLAMP5 
Exome Variant ServerLAMP5
ExAC (Exome Aggregation Consortium)LAMP5 (select the gene name)
Genetic variants : HAPMAP24141
Genomic Variants (DGV)LAMP5 [DGVbeta]
DECIPHERLAMP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLAMP5 
Mutations
ICGC Data PortalLAMP5 
TCGA Data PortalLAMP5 
Broad Tumor PortalLAMP5
OASIS PortalLAMP5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLAMP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LAMP5
DgiDB (Drug Gene Interaction Database)LAMP5
DoCM (Curated mutations)LAMP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LAMP5 (select a term)
intoGenLAMP5
Cancer3DLAMP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614641   
Orphanet
MedgenLAMP5
Genetic Testing Registry LAMP5
NextProtQ9UJQ1 [Medical]
TSGene24141
GENETestsLAMP5
Target ValidationLAMP5
Huge Navigator LAMP5 [HugePedia]
snp3D : Map Gene to Disease24141
BioCentury BCIQLAMP5
ClinGenLAMP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD24141
Chemical/Pharm GKB GenePA25643
Clinical trialLAMP5
Miscellaneous
canSAR (ICR)LAMP5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLAMP5
EVEXLAMP5
GoPubMedLAMP5
iHOPLAMP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:31 CEST 2017

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