Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LAMTOR5 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 5)

Identity

Alias_namesHBXIP
hepatitis B virus x interacting protein
Alias_symbol (synonym)XIP
MGC71071
Other alias
HGNC (Hugo) LAMTOR5
LocusID (NCBI) 10542
Atlas_Id 47590
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 110401255 and ends at 110407924 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LAMTOR5   17955
Cards
Entrez_Gene (NCBI)LAMTOR5  10542  late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
AliasesHBXIP; XIP
GeneCards (Weizmann)LAMTOR5
Ensembl hg19 (Hinxton)ENSG00000134248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134248 [Gene_View]  chr1:110401255-110407924 [Contig_View]  LAMTOR5 [Vega]
ICGC DataPortalENSG00000134248
TCGA cBioPortalLAMTOR5
AceView (NCBI)LAMTOR5
Genatlas (Paris)LAMTOR5
WikiGenes10542
SOURCE (Princeton)LAMTOR5
Genetics Home Reference (NIH)LAMTOR5
Genomic and cartography
GoldenPath hg38 (UCSC)LAMTOR5  -     chr1:110401255-110407924 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LAMTOR5  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblLAMTOR5 - 1p13.3 [CytoView hg19]  LAMTOR5 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBILAMTOR5 [Mapview hg19]  LAMTOR5 [Mapview hg38]
OMIM608521   
Gene and transcription
Genbank (Entrez)AA443738 AF029890 AK054769 AK056679 AY623819
RefSeq transcript (Entrez)NM_006402
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LAMTOR5
Cluster EST : UnigeneHs.439815 [ NCBI ]
CGAP (NCI)Hs.439815
Alternative Splicing GalleryENSG00000134248
Gene ExpressionLAMTOR5 [ NCBI-GEO ]   LAMTOR5 [ EBI - ARRAY_EXPRESS ]   LAMTOR5 [ SEEK ]   LAMTOR5 [ MEM ]
Gene Expression Viewer (FireBrowse)LAMTOR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10542
GTEX Portal (Tissue expression)LAMTOR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43504   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43504  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43504
Splice isoforms : SwissVarO43504
PhosPhoSitePlusO43504
Domains : Interpro (EBI)LAMTOR5   
Domain families : Pfam (Sanger)LAMTOR5 (PF16672)   
Domain families : Pfam (NCBI)pfam16672   
Conserved Domain (NCBI)LAMTOR5
DMDM Disease mutations10542
Blocks (Seattle)LAMTOR5
PDB (SRS)3MS6    3MSH   
PDB (PDBSum)3MS6    3MSH   
PDB (IMB)3MS6    3MSH   
PDB (RSDB)3MS6    3MSH   
Structural Biology KnowledgeBase3MS6    3MSH   
SCOP (Structural Classification of Proteins)3MS6    3MSH   
CATH (Classification of proteins structures)3MS6    3MSH   
SuperfamilyO43504
Human Protein AtlasENSG00000134248
Peptide AtlasO43504
HPRD09773
IPIIPI00935729   IPI00976097   
Protein Interaction databases
DIP (DOE-UCLA)O43504
IntAct (EBI)O43504
FunCoupENSG00000134248
BioGRIDLAMTOR5
STRING (EMBL)LAMTOR5
ZODIACLAMTOR5
Ontologies - Pathways
QuickGOO43504
Ontology : AmiGOguanyl-nucleotide exchange factor activity  protein binding  lysosome  lysosomal membrane  cytosol  cell cycle arrest  regulation of cell size  response to virus  macroautophagy  viral genome replication  positive regulation of TOR signaling  protein complex scaffold  negative regulation of apoptotic process  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  positive regulation of GTPase activity  protein localization to lysosome  cellular response to amino acid stimulus  Ragulator complex  
Ontology : EGO-EBIguanyl-nucleotide exchange factor activity  protein binding  lysosome  lysosomal membrane  cytosol  cell cycle arrest  regulation of cell size  response to virus  macroautophagy  viral genome replication  positive regulation of TOR signaling  protein complex scaffold  negative regulation of apoptotic process  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  positive regulation of GTPase activity  protein localization to lysosome  cellular response to amino acid stimulus  Ragulator complex  
Pathways : BIOCARTACalcium Signaling by HBx of Hepatitis B virus [Genes]   
Pathways : KEGGHepatitis B   
NDEx NetworkLAMTOR5
Atlas of Cancer Signalling NetworkLAMTOR5
Wikipedia pathwaysLAMTOR5
Orthology - Evolution
OrthoDB10542
GeneTree (enSembl)ENSG00000134248
Phylogenetic Trees/Animal Genes : TreeFamLAMTOR5
HOVERGENO43504
HOGENOMO43504
Homologs : HomoloGeneLAMTOR5
Homology/Alignments : Family Browser (UCSC)LAMTOR5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLAMTOR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LAMTOR5
dbVarLAMTOR5
ClinVarLAMTOR5
1000_GenomesLAMTOR5 
Exome Variant ServerLAMTOR5
ExAC (Exome Aggregation Consortium)LAMTOR5 (select the gene name)
Genetic variants : HAPMAP10542
Genomic Variants (DGV)LAMTOR5 [DGVbeta]
DECIPHERLAMTOR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLAMTOR5 
Mutations
ICGC Data PortalLAMTOR5 
TCGA Data PortalLAMTOR5 
Broad Tumor PortalLAMTOR5
OASIS PortalLAMTOR5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLAMTOR5
BioMutasearch LAMTOR5
DgiDB (Drug Gene Interaction Database)LAMTOR5
DoCM (Curated mutations)LAMTOR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LAMTOR5 (select a term)
intoGenLAMTOR5
Cancer3DLAMTOR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608521   
Orphanet
MedgenLAMTOR5
Genetic Testing Registry LAMTOR5
NextProtO43504 [Medical]
TSGene10542
GENETestsLAMTOR5
Target ValidationLAMTOR5
Huge Navigator LAMTOR5 [HugePedia]
snp3D : Map Gene to Disease10542
BioCentury BCIQLAMTOR5
ClinGenLAMTOR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10542
Chemical/Pharm GKB GenePA29211
Clinical trialLAMTOR5
Miscellaneous
canSAR (ICR)LAMTOR5 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLAMTOR5
EVEXLAMTOR5
GoPubMedLAMTOR5
iHOPLAMTOR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:40:12 CEST 2017

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