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LANCL1 (LanC like 1)

Identity

Alias_namesGPR69A
LanC (bacterial lantibiotic synthetase component C)-like 1
LanC lantibiotic synthetase component C-like 1 (bacterial)
Alias_symbol (synonym)p40
Other alias
HGNC (Hugo) LANCL1
LocusID (NCBI) 10314
Atlas_Id 41125
Location 2q34  [Link to chromosome band 2q34]
Location_base_pair Starts at 211295973 and ends at 211341429 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AKNAD1 (1p13.3) / LANCL1 (2q34)TET2 (4q24) / LANCL1 (2q34)TET2 4q24 / LANCL1 2q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LANCL1   6508
Cards
Entrez_Gene (NCBI)LANCL1  10314  LanC like 1
AliasesGPR69A; p40
GeneCards (Weizmann)LANCL1
Ensembl hg19 (Hinxton)ENSG00000115365 [Gene_View]  chr2:211295973-211341429 [Contig_View]  LANCL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115365 [Gene_View]  chr2:211295973-211341429 [Contig_View]  LANCL1 [Vega]
ICGC DataPortalENSG00000115365
TCGA cBioPortalLANCL1
AceView (NCBI)LANCL1
Genatlas (Paris)LANCL1
WikiGenes10314
SOURCE (Princeton)LANCL1
Genetics Home Reference (NIH)LANCL1
Genomic and cartography
GoldenPath hg19 (UCSC)LANCL1  -     chr2:211295973-211341429 -  2q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LANCL1  -     2q34   [Description]    (hg38-Dec_2013)
EnsemblLANCL1 - 2q34 [CytoView hg19]  LANCL1 - 2q34 [CytoView hg38]
Mapping of homologs : NCBILANCL1 [Mapview hg19]  LANCL1 [Mapview hg38]
OMIM604155   
Gene and transcription
Genbank (Entrez)AK294674 AK309295 AK312381 BC007041 BC028685
RefSeq transcript (Entrez)NM_001136574 NM_001136575 NM_006055
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)LANCL1
Cluster EST : UnigeneHs.13351 [ NCBI ]
CGAP (NCI)Hs.13351
Alternative Splicing GalleryENSG00000115365
Gene ExpressionLANCL1 [ NCBI-GEO ]   LANCL1 [ EBI - ARRAY_EXPRESS ]   LANCL1 [ SEEK ]   LANCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LANCL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10314
GTEX Portal (Tissue expression)LANCL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43813   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43813  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43813
Splice isoforms : SwissVarO43813
PhosPhoSitePlusO43813
Domains : Interpro (EBI)6hp_glycosidase    LANC-like    LanC-like_prot_euk   
Domain families : Pfam (Sanger)LANC_like (PF05147)   
Domain families : Pfam (NCBI)pfam05147   
Conserved Domain (NCBI)LANCL1
DMDM Disease mutations10314
Blocks (Seattle)LANCL1
PDB (SRS)3E6U    3E73   
PDB (PDBSum)3E6U    3E73   
PDB (IMB)3E6U    3E73   
PDB (RSDB)3E6U    3E73   
Structural Biology KnowledgeBase3E6U    3E73   
SCOP (Structural Classification of Proteins)3E6U    3E73   
CATH (Classification of proteins structures)3E6U    3E73   
SuperfamilyO43813
Human Protein AtlasENSG00000115365
Peptide AtlasO43813
HPRD16040
IPIIPI00005724   IPI00927255   IPI00924801   IPI00925235   
Protein Interaction databases
DIP (DOE-UCLA)O43813
IntAct (EBI)O43813
FunCoupENSG00000115365
BioGRIDLANCL1
STRING (EMBL)LANCL1
ZODIACLANCL1
Ontologies - Pathways
QuickGOO43813
Ontology : AmiGOcatalytic activity  G-protein coupled receptor activity  protein binding  cytoplasm  integral component of plasma membrane  G-protein coupled receptor signaling pathway  metabolic process  zinc ion binding  SH3 domain binding  glutathione binding  low-density lipoprotein particle receptor binding  extracellular exosome  
Ontology : EGO-EBIcatalytic activity  G-protein coupled receptor activity  protein binding  cytoplasm  integral component of plasma membrane  G-protein coupled receptor signaling pathway  metabolic process  zinc ion binding  SH3 domain binding  glutathione binding  low-density lipoprotein particle receptor binding  extracellular exosome  
NDEx NetworkLANCL1
Atlas of Cancer Signalling NetworkLANCL1
Wikipedia pathwaysLANCL1
Orthology - Evolution
OrthoDB10314
GeneTree (enSembl)ENSG00000115365
Phylogenetic Trees/Animal Genes : TreeFamLANCL1
HOVERGENO43813
HOGENOMO43813
Homologs : HomoloGeneLANCL1
Homology/Alignments : Family Browser (UCSC)LANCL1
Gene fusions - Rearrangements
Fusion: TCGATET2 4q24 LANCL1 2q34 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLANCL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LANCL1
dbVarLANCL1
ClinVarLANCL1
1000_GenomesLANCL1 
Exome Variant ServerLANCL1
ExAC (Exome Aggregation Consortium)LANCL1 (select the gene name)
Genetic variants : HAPMAP10314
Genomic Variants (DGV)LANCL1 [DGVbeta]
DECIPHER (Syndromes)2:211295973-211341429  ENSG00000115365
CONAN: Copy Number AnalysisLANCL1 
Mutations
ICGC Data PortalLANCL1 
TCGA Data PortalLANCL1 
Broad Tumor PortalLANCL1
OASIS PortalLANCL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLANCL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLANCL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LANCL1
DgiDB (Drug Gene Interaction Database)LANCL1
DoCM (Curated mutations)LANCL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LANCL1 (select a term)
intoGenLANCL1
Cancer3DLANCL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604155   
Orphanet
MedgenLANCL1
Genetic Testing Registry LANCL1
NextProtO43813 [Medical]
TSGene10314
GENETestsLANCL1
Huge Navigator LANCL1 [HugePedia]
snp3D : Map Gene to Disease10314
BioCentury BCIQLANCL1
ClinGenLANCL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10314
Chemical/Pharm GKB GenePA30293
Clinical trialLANCL1
Miscellaneous
canSAR (ICR)LANCL1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLANCL1
EVEXLANCL1
GoPubMedLANCL1
iHOPLANCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:28 CET 2017

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