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LANCL3 (LanC like 3)

Identity

Alias_namesLanC lantibiotic synthetase component C-like 3 (bacterial)
Alias_symbol (synonym)FLJ42925
Other alias-
HGNC (Hugo) LANCL3
LocusID (NCBI) 347404
Atlas_Id 65170
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 37571569 and ends at 37677497 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LANCL3   24767
Cards
Entrez_Gene (NCBI)LANCL3  347404  LanC like 3
Aliases
GeneCards (Weizmann)LANCL3
Ensembl hg19 (Hinxton)ENSG00000147036 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147036 [Gene_View]  chrX:37571569-37677497 [Contig_View]  LANCL3 [Vega]
ICGC DataPortalENSG00000147036
TCGA cBioPortalLANCL3
AceView (NCBI)LANCL3
Genatlas (Paris)LANCL3
WikiGenes347404
SOURCE (Princeton)LANCL3
Genetics Home Reference (NIH)LANCL3
Genomic and cartography
GoldenPath hg38 (UCSC)LANCL3  -     chrX:37571569-37677497 +  Xp21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LANCL3  -     Xp21.1   [Description]    (hg19-Feb_2009)
EnsemblLANCL3 - Xp21.1 [CytoView hg19]  LANCL3 - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBILANCL3 [Mapview hg19]  LANCL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI989993 AK124915 BC093667 BC093669 BC143528
RefSeq transcript (Entrez)NM_001170331 NM_198511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LANCL3
Cluster EST : UnigeneHs.521932 [ NCBI ]
CGAP (NCI)Hs.521932
Alternative Splicing GalleryENSG00000147036
Gene ExpressionLANCL3 [ NCBI-GEO ]   LANCL3 [ EBI - ARRAY_EXPRESS ]   LANCL3 [ SEEK ]   LANCL3 [ MEM ]
Gene Expression Viewer (FireBrowse)LANCL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347404
GTEX Portal (Tissue expression)LANCL3
Human Protein AtlasENSG00000147036-LANCL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZV70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZV70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZV70
Splice isoforms : SwissVarQ6ZV70
PhosPhoSitePlusQ6ZV70
Domains : Interpro (EBI)6hp_glycosidase    LANC-like    LanC-like_prot_euk   
Domain families : Pfam (Sanger)LANC_like (PF05147)   
Domain families : Pfam (NCBI)pfam05147   
Domain families : Smart (EMBL)LANC_like (SM01260)  
Conserved Domain (NCBI)LANCL3
DMDM Disease mutations347404
Blocks (Seattle)LANCL3
SuperfamilyQ6ZV70
Human Protein Atlas [tissue]ENSG00000147036-LANCL3 [tissue]
Peptide AtlasQ6ZV70
HPRD13957
IPIIPI00643639   IPI00394852   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZV70
IntAct (EBI)Q6ZV70
FunCoupENSG00000147036
BioGRIDLANCL3
STRING (EMBL)LANCL3
ZODIACLANCL3
Ontologies - Pathways
QuickGOQ6ZV70
Ontology : AmiGOplasma membrane  signal transduction  
Ontology : EGO-EBIplasma membrane  signal transduction  
NDEx NetworkLANCL3
Atlas of Cancer Signalling NetworkLANCL3
Wikipedia pathwaysLANCL3
Orthology - Evolution
OrthoDB347404
GeneTree (enSembl)ENSG00000147036
Phylogenetic Trees/Animal Genes : TreeFamLANCL3
HOVERGENQ6ZV70
HOGENOMQ6ZV70
Homologs : HomoloGeneLANCL3
Homology/Alignments : Family Browser (UCSC)LANCL3
Gene fusions - Rearrangements
Tumor Fusion PortalLANCL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLANCL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LANCL3
dbVarLANCL3
ClinVarLANCL3
1000_GenomesLANCL3 
Exome Variant ServerLANCL3
ExAC (Exome Aggregation Consortium)ENSG00000147036
GNOMAD BrowserENSG00000147036
Genetic variants : HAPMAP347404
Genomic Variants (DGV)LANCL3 [DGVbeta]
DECIPHERLANCL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLANCL3 
Mutations
ICGC Data PortalLANCL3 
TCGA Data PortalLANCL3 
Broad Tumor PortalLANCL3
OASIS PortalLANCL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLANCL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLANCL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch LANCL3
DgiDB (Drug Gene Interaction Database)LANCL3
DoCM (Curated mutations)LANCL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LANCL3 (select a term)
intoGenLANCL3
Cancer3DLANCL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLANCL3
MedgenLANCL3
Genetic Testing Registry LANCL3
NextProtQ6ZV70 [Medical]
TSGene347404
GENETestsLANCL3
Target ValidationLANCL3
Huge Navigator LANCL3 [HugePedia]
snp3D : Map Gene to Disease347404
BioCentury BCIQLANCL3
ClinGenLANCL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347404
Chemical/Pharm GKB GenePA134879796
Clinical trialLANCL3
Miscellaneous
canSAR (ICR)LANCL3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLANCL3
EVEXLANCL3
GoPubMedLANCL3
iHOPLANCL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:51 CET 2017

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