Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LARP1B (La ribonucleoprotein domain family member 1B)

Identity

Alias_namesLARP2
La ribonucleoprotein domain family, member 2
La ribonucleoprotein domain family, member 1B
Alias_symbol (synonym)FLJ10378
DKFZp434K245
DKFZp686E0316
Other alias
HGNC (Hugo) LARP1B
LocusID (NCBI) 55132
Atlas_Id 65175
Location 4q28.2  [Link to chromosome band 4q28]
Location_base_pair Starts at 128061266 and ends at 128108904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADCY2 (5p15.31) / LARP1B (4q28.2)LARP1B (4q28.2) / BTG3 (21q21.1)LARP1B (4q28.2) / FBLN1 (22q13.31)
LARP1B (4q28.2) / LARP1B (4q28.2)LARP1B (4q28.2) / TAF7 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LARP1B   24704
Cards
Entrez_Gene (NCBI)LARP1B  55132  La ribonucleoprotein domain family member 1B
AliasesLARP2
GeneCards (Weizmann)LARP1B
Ensembl hg19 (Hinxton)ENSG00000138709 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138709 [Gene_View]  chr4:128061266-128108904 [Contig_View]  LARP1B [Vega]
ICGC DataPortalENSG00000138709
TCGA cBioPortalLARP1B
AceView (NCBI)LARP1B
Genatlas (Paris)LARP1B
WikiGenes55132
SOURCE (Princeton)LARP1B
Genetics Home Reference (NIH)LARP1B
Genomic and cartography
GoldenPath hg38 (UCSC)LARP1B  -     chr4:128061266-128108904 +  4q28.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LARP1B  -     4q28.2   [Description]    (hg19-Feb_2009)
EnsemblLARP1B - 4q28.2 [CytoView hg19]  LARP1B - 4q28.2 [CytoView hg38]
Mapping of homologs : NCBILARP1B [Mapview hg19]  LARP1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA037692 AI188182 AI374914 AI652589 AI806546
RefSeq transcript (Entrez)NM_001278604 NM_001350531 NM_018078 NM_032239 NM_178043
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LARP1B
Cluster EST : UnigeneHs.657067 [ NCBI ]
CGAP (NCI)Hs.657067
Alternative Splicing GalleryENSG00000138709
Gene ExpressionLARP1B [ NCBI-GEO ]   LARP1B [ EBI - ARRAY_EXPRESS ]   LARP1B [ SEEK ]   LARP1B [ MEM ]
Gene Expression Viewer (FireBrowse)LARP1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55132
GTEX Portal (Tissue expression)LARP1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ659C4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ659C4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ659C4
Splice isoforms : SwissVarQ659C4
PhosPhoSitePlusQ659C4
Domaine pattern : Prosite (Expaxy)HTH_LA (PS50961)   
Domains : Interpro (EBI)DM15    Lupus_La_RNA-bd    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)La (PF05383)   
Domain families : Pfam (NCBI)pfam05383   
Domain families : Smart (EMBL)DM15 (SM00684)  LA (SM00715)  
Conserved Domain (NCBI)LARP1B
DMDM Disease mutations55132
Blocks (Seattle)LARP1B
SuperfamilyQ659C4
Human Protein AtlasENSG00000138709
Peptide AtlasQ659C4
HPRD10963
IPIIPI00383949   IPI00856120   IPI00940348   IPI00943149   IPI00855786   IPI00855812   IPI00855721   IPI00855930   IPI00855953   IPI00293654   IPI00376999   IPI00967511   
Protein Interaction databases
DIP (DOE-UCLA)Q659C4
IntAct (EBI)Q659C4
FunCoupENSG00000138709
BioGRIDLARP1B
STRING (EMBL)LARP1B
ZODIACLARP1B
Ontologies - Pathways
QuickGOQ659C4
Ontology : AmiGORNA binding  protein binding  nucleus  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  
NDEx NetworkLARP1B
Atlas of Cancer Signalling NetworkLARP1B
Wikipedia pathwaysLARP1B
Orthology - Evolution
OrthoDB55132
GeneTree (enSembl)ENSG00000138709
Phylogenetic Trees/Animal Genes : TreeFamLARP1B
HOVERGENQ659C4
HOGENOMQ659C4
Homologs : HomoloGeneLARP1B
Homology/Alignments : Family Browser (UCSC)LARP1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLARP1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LARP1B
dbVarLARP1B
ClinVarLARP1B
1000_GenomesLARP1B 
Exome Variant ServerLARP1B
ExAC (Exome Aggregation Consortium)LARP1B (select the gene name)
Genetic variants : HAPMAP55132
Genomic Variants (DGV)LARP1B [DGVbeta]
DECIPHERLARP1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLARP1B 
Mutations
ICGC Data PortalLARP1B 
TCGA Data PortalLARP1B 
Broad Tumor PortalLARP1B
OASIS PortalLARP1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLARP1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLARP1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LARP1B
DgiDB (Drug Gene Interaction Database)LARP1B
DoCM (Curated mutations)LARP1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LARP1B (select a term)
intoGenLARP1B
Cancer3DLARP1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLARP1B
Genetic Testing Registry LARP1B
NextProtQ659C4 [Medical]
TSGene55132
GENETestsLARP1B
Huge Navigator LARP1B [HugePedia]
snp3D : Map Gene to Disease55132
BioCentury BCIQLARP1B
ClinGenLARP1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55132
Chemical/Pharm GKB GenePA165664174
Clinical trialLARP1B
Miscellaneous
canSAR (ICR)LARP1B (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLARP1B
EVEXLARP1B
GoPubMedLARP1B
iHOPLARP1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:19:07 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.