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LARP4B (La ribonucleoprotein domain family member 4B)

Identity

Other aliasKIAA0217
LARP5
HGNC (Hugo) LARP4B
LocusID (NCBI) 23185
Atlas_Id 56893
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 806914 and ends at 931705 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCND3 (6p21.1) / LARP4B (10p15.3)JUN (1p32.1) / LARP4B (10p15.3)LARP4B (10p15.3) / LARP4B (10p15.3)
LARP4B (10p15.3) / PFKFB3 (10p15.1)LARP4B (10p15.3) / SMCO3 (12p12.3)LARP4B (10p15.3) / STAM2 (2q23.3)
LARP4B (10p15.3) / TSPAN33 (7q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LARP4B   28987
Cards
Entrez_Gene (NCBI)LARP4B  23185  La ribonucleoprotein domain family member 4B
AliasesKIAA0217; LARP5
GeneCards (Weizmann)LARP4B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:806914-931705 [Contig_View]  LARP4B [Vega]
TCGA cBioPortalLARP4B
AceView (NCBI)LARP4B
Genatlas (Paris)LARP4B
WikiGenes23185
SOURCE (Princeton)LARP4B
Genetics Home Reference (NIH)LARP4B
Genomic and cartography
GoldenPath hg38 (UCSC)LARP4B  -     chr10:806914-931705 -  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LARP4B  -     10p15.3   [Description]    (hg19-Feb_2009)
EnsemblLARP4B - 10p15.3 [CytoView hg19]  LARP4B - 10p15.3 [CytoView hg38]
Mapping of homologs : NCBILARP4B [Mapview hg19]  LARP4B [Mapview hg38]
OMIM616513   
Gene and transcription
Genbank (Entrez)AK126769 BC003381 BC131630 BC152443 CR749653
RefSeq transcript (Entrez)NM_015155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LARP4B
Cluster EST : UnigeneHs.215766 [ NCBI ]
CGAP (NCI)Hs.215766
Gene ExpressionLARP4B [ NCBI-GEO ]   LARP4B [ EBI - ARRAY_EXPRESS ]   LARP4B [ SEEK ]   LARP4B [ MEM ]
Gene Expression Viewer (FireBrowse)LARP4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23185
GTEX Portal (Tissue expression)LARP4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92615   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92615  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92615
Splice isoforms : SwissVarQ92615
PhosPhoSitePlusQ92615
Domaine pattern : Prosite (Expaxy)HTH_LA (PS50961)   
Domains : Interpro (EBI)Lupus_La_RNA-bd    Nucleotide-bd_a/b_plait    RRM_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)La (PF05383)   
Domain families : Pfam (NCBI)pfam05383   
Domain families : Smart (EMBL)LA (SM00715)  
Conserved Domain (NCBI)LARP4B
DMDM Disease mutations23185
Blocks (Seattle)LARP4B
PDB (SRS)3PTH   
PDB (PDBSum)3PTH   
PDB (IMB)3PTH   
PDB (RSDB)3PTH   
Structural Biology KnowledgeBase3PTH   
SCOP (Structural Classification of Proteins)3PTH   
CATH (Classification of proteins structures)3PTH   
SuperfamilyQ92615
Peptide AtlasQ92615
IPIIPI00953461   IPI00030464   IPI00640637   IPI00647011   IPI00514141   IPI00847241   
Protein Interaction databases
DIP (DOE-UCLA)Q92615
IntAct (EBI)Q92615
BioGRIDLARP4B
STRING (EMBL)LARP4B
ZODIACLARP4B
Ontologies - Pathways
QuickGOQ92615
Ontology : AmiGORNA binding  protein binding  nucleolus  cytosol  cytoplasmic stress granule  membrane  polysomal ribosome  positive regulation of translation  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  cytosol  cytoplasmic stress granule  membrane  polysomal ribosome  positive regulation of translation  
NDEx NetworkLARP4B
Atlas of Cancer Signalling NetworkLARP4B
Wikipedia pathwaysLARP4B
Orthology - Evolution
OrthoDB23185
Phylogenetic Trees/Animal Genes : TreeFamLARP4B
HOVERGENQ92615
HOGENOMQ92615
Homologs : HomoloGeneLARP4B
Homology/Alignments : Family Browser (UCSC)LARP4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLARP4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LARP4B
dbVarLARP4B
ClinVarLARP4B
1000_GenomesLARP4B 
Exome Variant ServerLARP4B
ExAC (Exome Aggregation Consortium)LARP4B (select the gene name)
Genetic variants : HAPMAP23185
Genomic Variants (DGV)LARP4B [DGVbeta]
DECIPHERLARP4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLARP4B 
Mutations
ICGC Data PortalLARP4B 
TCGA Data PortalLARP4B 
Broad Tumor PortalLARP4B
OASIS PortalLARP4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLARP4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLARP4B
BioMutasearch LARP4B
DgiDB (Drug Gene Interaction Database)LARP4B
DoCM (Curated mutations)LARP4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LARP4B (select a term)
intoGenLARP4B
Cancer3DLARP4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616513   
Orphanet
MedgenLARP4B
Genetic Testing Registry LARP4B
NextProtQ92615 [Medical]
TSGene23185
GENETestsLARP4B
Target ValidationLARP4B
Huge Navigator LARP4B [HugePedia]
snp3D : Map Gene to Disease23185
BioCentury BCIQLARP4B
ClinGenLARP4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23185
Chemical/Pharm GKB GenePA165548762
Clinical trialLARP4B
Miscellaneous
canSAR (ICR)LARP4B (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLARP4B
EVEXLARP4B
GoPubMedLARP4B
iHOPLARP4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:40:14 CEST 2017

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