Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LARP6 (La ribonucleoprotein domain family member 6)

Identity

Alias_namesLa ribonucleoprotein domain family
Alias_symbol (synonym)acheron
FLJ11196
Other aliasACHN
HGNC (Hugo) LARP6
LocusID (NCBI) 55323
Atlas_Id 52603
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 70831524 and ends at 70853458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LARP6 (15q23) / SFTPB (2p11.2)PPY (17q21.31) / LARP6 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LARP6   24012
Cards
Entrez_Gene (NCBI)LARP6  55323  La ribonucleoprotein domain family member 6
AliasesACHN
GeneCards (Weizmann)LARP6
Ensembl hg19 (Hinxton)ENSG00000166173 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166173 [Gene_View]  chr15:70831524-70853458 [Contig_View]  LARP6 [Vega]
ICGC DataPortalENSG00000166173
TCGA cBioPortalLARP6
AceView (NCBI)LARP6
Genatlas (Paris)LARP6
WikiGenes55323
SOURCE (Princeton)LARP6
Genetics Home Reference (NIH)LARP6
Genomic and cartography
GoldenPath hg38 (UCSC)LARP6  -     chr15:70831524-70853458 -  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LARP6  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblLARP6 - 15q23 [CytoView hg19]  LARP6 - 15q23 [CytoView hg38]
Mapping of homologs : NCBILARP6 [Mapview hg19]  LARP6 [Mapview hg38]
OMIM611300   
Gene and transcription
Genbank (Entrez)AF443828 AF443829 AI376944 AK002058 AK130092
RefSeq transcript (Entrez)NM_001286679 NM_018357 NM_197958
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LARP6
Cluster EST : UnigeneHs.416755 [ NCBI ]
CGAP (NCI)Hs.416755
Alternative Splicing GalleryENSG00000166173
Gene ExpressionLARP6 [ NCBI-GEO ]   LARP6 [ EBI - ARRAY_EXPRESS ]   LARP6 [ SEEK ]   LARP6 [ MEM ]
Gene Expression Viewer (FireBrowse)LARP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55323
GTEX Portal (Tissue expression)LARP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRS8
Splice isoforms : SwissVarQ9BRS8
PhosPhoSitePlusQ9BRS8
Domaine pattern : Prosite (Expaxy)HTH_LA (PS50961)   
Domains : Interpro (EBI)Lupus_La    Lupus_La_RNA-bd    Nucleotide-bd_a/b_plait    RRM_dom    SUZ-C    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)La (PF05383)    SUZ-C (PF12901)   
Domain families : Pfam (NCBI)pfam05383    pfam12901   
Domain families : Smart (EMBL)LA (SM00715)  
Conserved Domain (NCBI)LARP6
DMDM Disease mutations55323
Blocks (Seattle)LARP6
PDB (SRS)2MTF    2MTG   
PDB (PDBSum)2MTF    2MTG   
PDB (IMB)2MTF    2MTG   
PDB (RSDB)2MTF    2MTG   
Structural Biology KnowledgeBase2MTF    2MTG   
SCOP (Structural Classification of Proteins)2MTF    2MTG   
CATH (Classification of proteins structures)2MTF    2MTG   
SuperfamilyQ9BRS8
Human Protein AtlasENSG00000166173
Peptide AtlasQ9BRS8
HPRD10966
IPIIPI00414661   IPI00377127   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRS8
IntAct (EBI)Q9BRS8
FunCoupENSG00000166173
BioGRIDLARP6
STRING (EMBL)LARP6
ZODIACLARP6
Ontologies - Pathways
QuickGOQ9BRS8
Ontology : AmiGORNA binding  nucleus  cytoplasm  RNA processing  regulation of translation  intracellular ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  nucleus  cytoplasm  RNA processing  regulation of translation  intracellular ribonucleoprotein complex  
NDEx NetworkLARP6
Atlas of Cancer Signalling NetworkLARP6
Wikipedia pathwaysLARP6
Orthology - Evolution
OrthoDB55323
GeneTree (enSembl)ENSG00000166173
Phylogenetic Trees/Animal Genes : TreeFamLARP6
HOVERGENQ9BRS8
HOGENOMQ9BRS8
Homologs : HomoloGeneLARP6
Homology/Alignments : Family Browser (UCSC)LARP6
Gene fusions - Rearrangements
Fusion Cancer (Beijing)LARP6 [15q23]  -  SFTPB [2p11.2]  [FUSC003635]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLARP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LARP6
dbVarLARP6
ClinVarLARP6
1000_GenomesLARP6 
Exome Variant ServerLARP6
ExAC (Exome Aggregation Consortium)LARP6 (select the gene name)
Genetic variants : HAPMAP55323
Genomic Variants (DGV)LARP6 [DGVbeta]
DECIPHERLARP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLARP6 
Mutations
ICGC Data PortalLARP6 
TCGA Data PortalLARP6 
Broad Tumor PortalLARP6
OASIS PortalLARP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLARP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLARP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LARP6
DgiDB (Drug Gene Interaction Database)LARP6
DoCM (Curated mutations)LARP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LARP6 (select a term)
intoGenLARP6
Cancer3DLARP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611300   
Orphanet
MedgenLARP6
Genetic Testing Registry LARP6
NextProtQ9BRS8 [Medical]
TSGene55323
GENETestsLARP6
Target ValidationLARP6
Huge Navigator LARP6 [HugePedia]
snp3D : Map Gene to Disease55323
BioCentury BCIQLARP6
ClinGenLARP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55323
Chemical/Pharm GKB GenePA142671568
Clinical trialLARP6
Miscellaneous
canSAR (ICR)LARP6 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLARP6
EVEXLARP6
GoPubMedLARP6
iHOPLARP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:40:15 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.