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LARP7 (La ribonucleoprotein domain family member 7)

Identity

Alias_namesLa ribonucleoprotein domain family
Alias_symbol (synonym)HDCMA18P
PIP7S
DKFZP564K112
Other aliasALAZS
HGNC (Hugo) LARP7
LocusID (NCBI) 51574
Atlas_Id 52870
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 112636964 and ends at 112657592 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FNIP2 (4q32.1) / LARP7 (4q25)LARP7 (4q25) / LARP7 (4q25)LARP7 (4q25) / SPRED1 (15q14)
PLEC (8q24.3) / LARP7 (4q25)RHOA (3p21.31) / LARP7 (4q25)TET2 (4q24) / LARP7 (4q25)
FNIP2 4q32.1 / LARP7 4q25TET2 4q24 / LARP7 4q25

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LARP7   24912
Cards
Entrez_Gene (NCBI)LARP7  51574  La ribonucleoprotein domain family member 7
AliasesALAZS; HDCMA18P; PIP7S
GeneCards (Weizmann)LARP7
Ensembl hg19 (Hinxton)ENSG00000174720 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174720 [Gene_View]  chr4:112636964-112657592 [Contig_View]  LARP7 [Vega]
ICGC DataPortalENSG00000174720
TCGA cBioPortalLARP7
AceView (NCBI)LARP7
Genatlas (Paris)LARP7
WikiGenes51574
SOURCE (Princeton)LARP7
Genetics Home Reference (NIH)LARP7
Genomic and cartography
GoldenPath hg38 (UCSC)LARP7  -     chr4:112636964-112657592 +  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LARP7  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblLARP7 - 4q25 [CytoView hg19]  LARP7 - 4q25 [CytoView hg38]
Mapping of homologs : NCBILARP7 [Mapview hg19]  LARP7 [Mapview hg38]
OMIM612026   615071   
Gene and transcription
Genbank (Entrez)AF068284 AI652351 AK000274 AK225900 AL049996
RefSeq transcript (Entrez)NM_001267039 NM_015454 NM_016648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LARP7
Cluster EST : UnigeneHs.713663 [ NCBI ]
CGAP (NCI)Hs.713663
Alternative Splicing GalleryENSG00000174720
Gene ExpressionLARP7 [ NCBI-GEO ]   LARP7 [ EBI - ARRAY_EXPRESS ]   LARP7 [ SEEK ]   LARP7 [ MEM ]
Gene Expression Viewer (FireBrowse)LARP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51574
GTEX Portal (Tissue expression)LARP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0J3
Splice isoforms : SwissVarQ4G0J3
PhosPhoSitePlusQ4G0J3
Domaine pattern : Prosite (Expaxy)HTH_LA (PS50961)    RRM (PS50102)   
Domains : Interpro (EBI)La_RRM    Lupus_La    Lupus_La_RNA-bd    Nucleotide-bd_a/b_plait    RRM_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)La (PF05383)    RRM_1 (PF00076)    RRM_3 (PF08777)   
Domain families : Pfam (NCBI)pfam05383    pfam00076    pfam08777   
Domain families : Smart (EMBL)LA (SM00715)  RRM (SM00360)  
Conserved Domain (NCBI)LARP7
DMDM Disease mutations51574
Blocks (Seattle)LARP7
PDB (SRS)4WKR    5KNW   
PDB (PDBSum)4WKR    5KNW   
PDB (IMB)4WKR    5KNW   
PDB (RSDB)4WKR    5KNW   
Structural Biology KnowledgeBase4WKR    5KNW   
SCOP (Structural Classification of Proteins)4WKR    5KNW   
CATH (Classification of proteins structures)4WKR    5KNW   
SuperfamilyQ4G0J3
Human Protein AtlasENSG00000174720
Peptide AtlasQ4G0J3
HPRD17095
IPIIPI00294742   IPI00063941   IPI00395536   IPI00965610   IPI00966774   IPI00967495   IPI00966387   IPI00964944   IPI00964251   IPI00967723   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0J3
IntAct (EBI)Q4G0J3
FunCoupENSG00000174720
BioGRIDLARP7
STRING (EMBL)LARP7
ZODIACLARP7
Ontologies - Pathways
QuickGOQ4G0J3
Ontology : AmiGORNA binding  protein binding  nucleoplasm  cytosol  RNA processing  intracellular ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  cytosol  RNA processing  intracellular ribonucleoprotein complex  
NDEx NetworkLARP7
Atlas of Cancer Signalling NetworkLARP7
Wikipedia pathwaysLARP7
Orthology - Evolution
OrthoDB51574
GeneTree (enSembl)ENSG00000174720
Phylogenetic Trees/Animal Genes : TreeFamLARP7
HOVERGENQ4G0J3
HOGENOMQ4G0J3
Homologs : HomoloGeneLARP7
Homology/Alignments : Family Browser (UCSC)LARP7
Gene fusions - Rearrangements
Fusion : MitelmanFNIP2/LARP7 [4q32.1/4q25]  [t(4;4)(q25;q32)]  
Fusion: TCGAFNIP2 4q32.1 LARP7 4q25 BRCA
Fusion: TCGATET2 4q24 LARP7 4q25 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLARP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LARP7
dbVarLARP7
ClinVarLARP7
1000_GenomesLARP7 
Exome Variant ServerLARP7
ExAC (Exome Aggregation Consortium)LARP7 (select the gene name)
Genetic variants : HAPMAP51574
Genomic Variants (DGV)LARP7 [DGVbeta]
DECIPHERLARP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLARP7 
Mutations
ICGC Data PortalLARP7 
TCGA Data PortalLARP7 
Broad Tumor PortalLARP7
OASIS PortalLARP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLARP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLARP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LARP7
DgiDB (Drug Gene Interaction Database)LARP7
DoCM (Curated mutations)LARP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LARP7 (select a term)
intoGenLARP7
Cancer3DLARP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612026    615071   
Orphanet21690   
MedgenLARP7
Genetic Testing Registry LARP7
NextProtQ4G0J3 [Medical]
TSGene51574
GENETestsLARP7
Target ValidationLARP7
Huge Navigator LARP7 [HugePedia]
snp3D : Map Gene to Disease51574
BioCentury BCIQLARP7
ClinGenLARP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51574
Chemical/Pharm GKB GenePA145148525
Clinical trialLARP7
Miscellaneous
canSAR (ICR)LARP7 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLARP7
EVEXLARP7
GoPubMedLARP7
iHOPLARP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 25 19:15:07 CEST 2017

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