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LAYN (layilin)

Identity

Alias_symbol (synonym)FLJ30977
FLJ31092
Other alias-
HGNC (Hugo) LAYN
LocusID (NCBI) 143903
Atlas_Id 65181
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111411233 and ends at 111432470 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KANSL1 (17q21.31) / LAYN (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LAYN   29471
Cards
Entrez_Gene (NCBI)LAYN  143903  layilin
Aliases
GeneCards (Weizmann)LAYN
Ensembl hg19 (Hinxton)ENSG00000204381 [Gene_View]  chr11:111411233-111432470 [Contig_View]  LAYN [Vega]
Ensembl hg38 (Hinxton)ENSG00000204381 [Gene_View]  chr11:111411233-111432470 [Contig_View]  LAYN [Vega]
ICGC DataPortalENSG00000204381
TCGA cBioPortalLAYN
AceView (NCBI)LAYN
Genatlas (Paris)LAYN
WikiGenes143903
SOURCE (Princeton)LAYN
Genetics Home Reference (NIH)LAYN
Genomic and cartography
GoldenPath hg19 (UCSC)LAYN  -     chr11:111411233-111432470 +  11q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LAYN  -     11q23.1   [Description]    (hg38-Dec_2013)
EnsemblLAYN - 11q23.1 [CytoView hg19]  LAYN - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBILAYN [Mapview hg19]  LAYN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055539 AK055654 AK293317 AK296231 AK298165
RefSeq transcript (Entrez)NM_001258390 NM_001258391 NM_178834
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)LAYN
Cluster EST : UnigeneHs.503831 [ NCBI ]
CGAP (NCI)Hs.503831
Alternative Splicing GalleryENSG00000204381
Gene ExpressionLAYN [ NCBI-GEO ]   LAYN [ EBI - ARRAY_EXPRESS ]   LAYN [ SEEK ]   LAYN [ MEM ]
Gene Expression Viewer (FireBrowse)LAYN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143903
GTEX Portal (Tissue expression)LAYN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX15
Splice isoforms : SwissVarQ6UX15
PhosPhoSitePlusQ6UX15
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)LAYN
DMDM Disease mutations143903
Blocks (Seattle)LAYN
SuperfamilyQ6UX15
Human Protein AtlasENSG00000204381
Peptide AtlasQ6UX15
HPRD17299
IPIIPI00418125   IPI00744423   IPI00909031   IPI00979487   IPI00978869   IPI00977627   IPI00978275   IPI00977042   IPI00976449   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX15
IntAct (EBI)Q6UX15
FunCoupENSG00000204381
BioGRIDLAYN
STRING (EMBL)LAYN
ZODIACLAYN
Ontologies - Pathways
QuickGOQ6UX15
Ontology : AmiGOruffle  hyaluronic acid binding  focal adhesion  focal adhesion  cell surface  integral component of membrane  carbohydrate binding  
Ontology : EGO-EBIruffle  hyaluronic acid binding  focal adhesion  focal adhesion  cell surface  integral component of membrane  carbohydrate binding  
NDEx NetworkLAYN
Atlas of Cancer Signalling NetworkLAYN
Wikipedia pathwaysLAYN
Orthology - Evolution
OrthoDB143903
GeneTree (enSembl)ENSG00000204381
Phylogenetic Trees/Animal Genes : TreeFamLAYN
HOVERGENQ6UX15
HOGENOMQ6UX15
Homologs : HomoloGeneLAYN
Homology/Alignments : Family Browser (UCSC)LAYN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLAYN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LAYN
dbVarLAYN
ClinVarLAYN
1000_GenomesLAYN 
Exome Variant ServerLAYN
ExAC (Exome Aggregation Consortium)LAYN (select the gene name)
Genetic variants : HAPMAP143903
Genomic Variants (DGV)LAYN [DGVbeta]
DECIPHER (Syndromes)11:111411233-111432470  ENSG00000204381
CONAN: Copy Number AnalysisLAYN 
Mutations
ICGC Data PortalLAYN 
TCGA Data PortalLAYN 
Broad Tumor PortalLAYN
OASIS PortalLAYN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLAYN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLAYN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LAYN
DgiDB (Drug Gene Interaction Database)LAYN
DoCM (Curated mutations)LAYN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LAYN (select a term)
intoGenLAYN
Cancer3DLAYN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLAYN
Genetic Testing Registry LAYN
NextProtQ6UX15 [Medical]
TSGene143903
GENETestsLAYN
Huge Navigator LAYN [HugePedia]
snp3D : Map Gene to Disease143903
BioCentury BCIQLAYN
ClinGenLAYN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143903
Chemical/Pharm GKB GenePA142671570
Clinical trialLAYN
Miscellaneous
canSAR (ICR)LAYN (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLAYN
EVEXLAYN
GoPubMedLAYN
iHOPLAYN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:47 CET 2017

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