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LBH (limb bud and heart development)

Identity

Alias_nameslimb bud and heart development homolog (mouse)
Other alias-
HGNC (Hugo) LBH
LocusID (NCBI) 81606
Atlas_Id 50369
Location 2p23.1  [Link to chromosome band 2p23]
Location_base_pair Starts at 30231531 and ends at 30260033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LBH (2p23.1) / F3 (1p21.3)LBH (2p23.1) / RPL8 (8q24.3)LBH (2p23.1) / SMCR8 (17p11.2)
PWWP2B (10q26.3) / LBH (2p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LBH   29532
Cards
Entrez_Gene (NCBI)LBH  81606  limb bud and heart development
Aliases
GeneCards (Weizmann)LBH
Ensembl hg19 (Hinxton)ENSG00000213626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213626 [Gene_View]  ENSG00000213626 [Sequence]  chr2:30231531-30260033 [Contig_View]  LBH [Vega]
ICGC DataPortalENSG00000213626
TCGA cBioPortalLBH
AceView (NCBI)LBH
Genatlas (Paris)LBH
WikiGenes81606
SOURCE (Princeton)LBH
Genetics Home Reference (NIH)LBH
Genomic and cartography
GoldenPath hg38 (UCSC)LBH  -     chr2:30231531-30260033 +  2p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LBH  -     2p23.1   [Description]    (hg19-Feb_2009)
EnsemblLBH - 2p23.1 [CytoView hg19]  LBH - 2p23.1 [CytoView hg38]
Mapping of homologs : NCBILBH [Mapview hg19]  LBH [Mapview hg38]
OMIM611763   
Gene and transcription
Genbank (Entrez)AF110224 AF258555 AI302040 AK023425 AK027232
RefSeq transcript (Entrez)NM_030915
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LBH
Cluster EST : UnigeneHs.593113 [ NCBI ]
CGAP (NCI)Hs.593113
Alternative Splicing GalleryENSG00000213626
Gene ExpressionLBH [ NCBI-GEO ]   LBH [ EBI - ARRAY_EXPRESS ]   LBH [ SEEK ]   LBH [ MEM ]
Gene Expression Viewer (FireBrowse)LBH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81606
GTEX Portal (Tissue expression)LBH
Human Protein AtlasENSG00000213626-LBH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53QV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53QV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53QV2
Splice isoforms : SwissVarQ53QV2
PhosPhoSitePlusQ53QV2
Domains : Interpro (EBI)LBH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LBH
DMDM Disease mutations81606
Blocks (Seattle)LBH
SuperfamilyQ53QV2
Human Protein Atlas [tissue]ENSG00000213626-LBH [tissue]
Peptide AtlasQ53QV2
HPRD13965
IPIIPI00333338   IPI00894124   IPI00894252   IPI00894270   IPI00787940   IPI00788170   
Protein Interaction databases
DIP (DOE-UCLA)Q53QV2
IntAct (EBI)Q53QV2
FunCoupENSG00000213626
BioGRIDLBH
STRING (EMBL)LBH
ZODIACLBH
Ontologies - Pathways
QuickGOQ53QV2
Ontology : AmiGOnucleus  cytoplasm  transcription, DNA-templated  negative regulation of intracellular estrogen receptor signaling pathway  positive regulation of transcription, DNA-templated  mammary gland epithelial cell differentiation  positive regulation of somatic stem cell population maintenance  positive regulation of somatic stem cell division  positive regulation of mammary stem cell proliferation  negative regulation of stem cell differentiation  
Ontology : EGO-EBInucleus  cytoplasm  transcription, DNA-templated  negative regulation of intracellular estrogen receptor signaling pathway  positive regulation of transcription, DNA-templated  mammary gland epithelial cell differentiation  positive regulation of somatic stem cell population maintenance  positive regulation of somatic stem cell division  positive regulation of mammary stem cell proliferation  negative regulation of stem cell differentiation  
NDEx NetworkLBH
Atlas of Cancer Signalling NetworkLBH
Wikipedia pathwaysLBH
Orthology - Evolution
OrthoDB81606
GeneTree (enSembl)ENSG00000213626
Phylogenetic Trees/Animal Genes : TreeFamLBH
HOVERGENQ53QV2
HOGENOMQ53QV2
Homologs : HomoloGeneLBH
Homology/Alignments : Family Browser (UCSC)LBH
Gene fusions - Rearrangements
Fusion : QuiverLBH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLBH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LBH
dbVarLBH
ClinVarLBH
1000_GenomesLBH 
Exome Variant ServerLBH
ExAC (Exome Aggregation Consortium)ENSG00000213626
GNOMAD BrowserENSG00000213626
Varsome BrowserLBH
Genetic variants : HAPMAP81606
Genomic Variants (DGV)LBH [DGVbeta]
DECIPHERLBH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLBH 
Mutations
ICGC Data PortalLBH 
TCGA Data PortalLBH 
Broad Tumor PortalLBH
OASIS PortalLBH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLBH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLBH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LBH
DgiDB (Drug Gene Interaction Database)LBH
DoCM (Curated mutations)LBH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LBH (select a term)
intoGenLBH
Cancer3DLBH(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611763   
Orphanet
DisGeNETLBH
MedgenLBH
Genetic Testing Registry LBH
NextProtQ53QV2 [Medical]
TSGene81606
GENETestsLBH
Target ValidationLBH
Huge Navigator LBH [HugePedia]
snp3D : Map Gene to Disease81606
BioCentury BCIQLBH
ClinGenLBH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81606
Chemical/Pharm GKB GenePA162393798
Clinical trialLBH
Miscellaneous
canSAR (ICR)LBH (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLBH
EVEXLBH
GoPubMedLBH
iHOPLBH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:31:33 CEST 2018

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