Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LBHD1 (LBH domain containing 1)

Identity

Alias_namesC11orf48
chromosome 11 open reading frame 48
Alias_symbol (synonym)MGC2477
Other alias
HGNC (Hugo) LBHD1
LocusID (NCBI) 79081
Atlas_Id 65182
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62662817 and ends at 62671769 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LBHD1   28351
Cards
Entrez_Gene (NCBI)LBHD1  79081  LBH domain containing 1
AliasesC11orf48
GeneCards (Weizmann)LBHD1
Ensembl hg19 (Hinxton)ENSG00000162194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162194 [Gene_View]  chr11:62662817-62671769 [Contig_View]  LBHD1 [Vega]
ICGC DataPortalENSG00000162194
TCGA cBioPortalLBHD1
AceView (NCBI)LBHD1
Genatlas (Paris)LBHD1
WikiGenes79081
SOURCE (Princeton)LBHD1
Genetics Home Reference (NIH)LBHD1
Genomic and cartography
GoldenPath hg38 (UCSC)LBHD1  -     chr11:62662817-62671769 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LBHD1  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblLBHD1 - 11q12.3 [CytoView hg19]  LBHD1 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBILBHD1 [Mapview hg19]  LBHD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055736 AK124145 AK302538 BC001434 BI831485
RefSeq transcript (Entrez)NM_024099
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LBHD1
Cluster EST : UnigeneHs.9061 [ NCBI ]
CGAP (NCI)Hs.9061
Alternative Splicing GalleryENSG00000162194
Gene ExpressionLBHD1 [ NCBI-GEO ]   LBHD1 [ EBI - ARRAY_EXPRESS ]   LBHD1 [ SEEK ]   LBHD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LBHD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79081
GTEX Portal (Tissue expression)LBHD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQE6
Splice isoforms : SwissVarQ9BQE6
PhosPhoSitePlusQ9BQE6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LBHD1
DMDM Disease mutations79081
Blocks (Seattle)LBHD1
SuperfamilyQ9BQE6
Human Protein AtlasENSG00000162194
Peptide AtlasQ9BQE6
HPRD14499
IPIIPI00843784   IPI00410722   IPI00910751   IPI00983062   IPI00983682   IPI00973791   IPI00984564   IPI00977376   IPI01013502   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQE6
IntAct (EBI)Q9BQE6
FunCoupENSG00000162194
BioGRIDLBHD1
STRING (EMBL)LBHD1
ZODIACLBHD1
Ontologies - Pathways
QuickGOQ9BQE6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLBHD1
Atlas of Cancer Signalling NetworkLBHD1
Wikipedia pathwaysLBHD1
Orthology - Evolution
OrthoDB79081
GeneTree (enSembl)ENSG00000162194
Phylogenetic Trees/Animal Genes : TreeFamLBHD1
HOVERGENQ9BQE6
HOGENOMQ9BQE6
Homologs : HomoloGeneLBHD1
Homology/Alignments : Family Browser (UCSC)LBHD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLBHD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LBHD1
dbVarLBHD1
ClinVarLBHD1
1000_GenomesLBHD1 
Exome Variant ServerLBHD1
ExAC (Exome Aggregation Consortium)LBHD1 (select the gene name)
Genetic variants : HAPMAP79081
Genomic Variants (DGV)LBHD1 [DGVbeta]
DECIPHERLBHD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLBHD1 
Mutations
ICGC Data PortalLBHD1 
TCGA Data PortalLBHD1 
Broad Tumor PortalLBHD1
OASIS PortalLBHD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLBHD1
BioMutasearch LBHD1
DgiDB (Drug Gene Interaction Database)LBHD1
DoCM (Curated mutations)LBHD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LBHD1 (select a term)
intoGenLBHD1
Cancer3DLBHD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLBHD1
Genetic Testing Registry LBHD1
NextProtQ9BQE6 [Medical]
TSGene79081
GENETestsLBHD1
Target ValidationLBHD1
Huge Navigator LBHD1 [HugePedia]
snp3D : Map Gene to Disease79081
BioCentury BCIQLBHD1
ClinGenLBHD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79081
Chemical/Pharm GKB GenePA142672293
Clinical trialLBHD1
Miscellaneous
canSAR (ICR)LBHD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLBHD1
EVEXLBHD1
GoPubMedLBHD1
iHOPLBHD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:35 CEST 2017

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