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LBX2 (ladybird homeobox 2)

Identity

Alias_namesladybird homeobox homolog 2 (Drosophila)
Other aliasLP3727
HGNC (Hugo) LBX2
LocusID (NCBI) 85474
Atlas_Id 65184
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74497517 and ends at 74503316 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LBX2   15525
Cards
Entrez_Gene (NCBI)LBX2  85474  ladybird homeobox 2
AliasesLP3727
GeneCards (Weizmann)LBX2
Ensembl hg19 (Hinxton)ENSG00000179528 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179528 [Gene_View]  chr2:74497517-74503316 [Contig_View]  LBX2 [Vega]
ICGC DataPortalENSG00000179528
TCGA cBioPortalLBX2
AceView (NCBI)LBX2
Genatlas (Paris)LBX2
WikiGenes85474
SOURCE (Princeton)LBX2
Genetics Home Reference (NIH)LBX2
Genomic and cartography
GoldenPath hg38 (UCSC)LBX2  -     chr2:74497517-74503316 -  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LBX2  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblLBX2 - 2p13.1 [CytoView hg19]  LBX2 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBILBX2 [Mapview hg19]  LBX2 [Mapview hg38]
OMIM607164   
Gene and transcription
Genbank (Entrez)AY203953 AY305861 BC144442 BC150517 BC160076
RefSeq transcript (Entrez)NM_001009812 NM_001282430
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LBX2
Cluster EST : UnigeneHs.516124 [ NCBI ]
CGAP (NCI)Hs.516124
Alternative Splicing GalleryENSG00000179528
Gene ExpressionLBX2 [ NCBI-GEO ]   LBX2 [ EBI - ARRAY_EXPRESS ]   LBX2 [ SEEK ]   LBX2 [ MEM ]
Gene Expression Viewer (FireBrowse)LBX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85474
GTEX Portal (Tissue expression)LBX2
Human Protein AtlasENSG00000179528-LBX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XYB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XYB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XYB7
Splice isoforms : SwissVarQ6XYB7
PhosPhoSitePlusQ6XYB7
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)LBX2
DMDM Disease mutations85474
Blocks (Seattle)LBX2
SuperfamilyQ6XYB7
Human Protein Atlas [tissue]ENSG00000179528-LBX2 [tissue]
Peptide AtlasQ6XYB7
HPRD16235
IPIIPI00550811   IPI00376237   IPI01020903   
Protein Interaction databases
DIP (DOE-UCLA)Q6XYB7
IntAct (EBI)Q6XYB7
FunCoupENSG00000179528
BioGRIDLBX2
STRING (EMBL)LBX2
ZODIACLBX2
Ontologies - Pathways
QuickGOQ6XYB7
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkLBX2
Atlas of Cancer Signalling NetworkLBX2
Wikipedia pathwaysLBX2
Orthology - Evolution
OrthoDB85474
GeneTree (enSembl)ENSG00000179528
Phylogenetic Trees/Animal Genes : TreeFamLBX2
HOVERGENQ6XYB7
HOGENOMQ6XYB7
Homologs : HomoloGeneLBX2
Homology/Alignments : Family Browser (UCSC)LBX2
Gene fusions - Rearrangements
Tumor Fusion PortalLBX2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLBX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LBX2
dbVarLBX2
ClinVarLBX2
1000_GenomesLBX2 
Exome Variant ServerLBX2
ExAC (Exome Aggregation Consortium)ENSG00000179528
GNOMAD BrowserENSG00000179528
Genetic variants : HAPMAP85474
Genomic Variants (DGV)LBX2 [DGVbeta]
DECIPHERLBX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLBX2 
Mutations
ICGC Data PortalLBX2 
TCGA Data PortalLBX2 
Broad Tumor PortalLBX2
OASIS PortalLBX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLBX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLBX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LBX2
DgiDB (Drug Gene Interaction Database)LBX2
DoCM (Curated mutations)LBX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LBX2 (select a term)
intoGenLBX2
Cancer3DLBX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607164   
Orphanet
DisGeNETLBX2
MedgenLBX2
Genetic Testing Registry LBX2
NextProtQ6XYB7 [Medical]
TSGene85474
GENETestsLBX2
Target ValidationLBX2
Huge Navigator LBX2 [HugePedia]
snp3D : Map Gene to Disease85474
BioCentury BCIQLBX2
ClinGenLBX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85474
Chemical/Pharm GKB GenePA30305
Clinical trialLBX2
Miscellaneous
canSAR (ICR)LBX2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLBX2
EVEXLBX2
GoPubMedLBX2
iHOPLBX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:50 CET 2017

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