Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LCA10 (lung carcinoma-associated 10)

Identity

Other aliasLCAP
HGNC (Hugo) -
LocusID (NCBI) 100996465
Atlas_Id 52790
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153880672 and ends at 153888973 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LCA10  100996465  lung carcinoma-associated 10
AliasesLCAP
GeneCards (Weizmann)LCA10
Ensembl hg19 (Hinxton)ENSG00000273769 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273769 [Gene_View]  chrX:153880672-153888973 [Contig_View]  LCA10 [Vega]
ICGC DataPortalENSG00000273769
TCGA cBioPortalLCA10
AceView (NCBI)LCA10
Genatlas (Paris)LCA10
WikiGenes100996465
SOURCE (Princeton)LCA10
Genetics Home Reference (NIH)LCA10
Genomic and cartography
GoldenPath hg38 (UCSC)LCA10  -     chrX:153880672-153888973 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCA10  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblLCA10 - Xq28 [CytoView hg19]  LCA10 - Xq28 [CytoView hg38]
Mapping of homologs : NCBILCA10 [Mapview hg19]  LCA10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF514420
RefSeq transcript (Entrez)NM_001039768
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCA10
Cluster EST : UnigeneHs.547855 [ NCBI ]
CGAP (NCI)Hs.547855
Alternative Splicing GalleryENSG00000273769
Gene ExpressionLCA10 [ NCBI-GEO ]   LCA10 [ EBI - ARRAY_EXPRESS ]   LCA10 [ SEEK ]   LCA10 [ MEM ]
Gene Expression Viewer (FireBrowse)LCA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996465
GTEX Portal (Tissue expression)LCA10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71F78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71F78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71F78
Splice isoforms : SwissVarQ71F78
PhosPhoSitePlusQ71F78
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LCA10
DMDM Disease mutations100996465
Blocks (Seattle)LCA10
SuperfamilyQ71F78
Human Protein AtlasENSG00000273769
Peptide AtlasQ71F78
Protein Interaction databases
DIP (DOE-UCLA)Q71F78
IntAct (EBI)Q71F78
FunCoupENSG00000273769
BioGRIDLCA10
STRING (EMBL)LCA10
ZODIACLCA10
Ontologies - Pathways
QuickGOQ71F78
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLCA10
Atlas of Cancer Signalling NetworkLCA10
Wikipedia pathwaysLCA10
Orthology - Evolution
OrthoDB100996465
GeneTree (enSembl)ENSG00000273769
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ71F78
HOGENOMQ71F78
Homologs : HomoloGeneLCA10
Homology/Alignments : Family Browser (UCSC)LCA10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCA10
dbVarLCA10
ClinVarLCA10
1000_GenomesLCA10 
Exome Variant ServerLCA10
ExAC (Exome Aggregation Consortium)LCA10 (select the gene name)
Genetic variants : HAPMAP100996465
Genomic Variants (DGV)LCA10 [DGVbeta]
DECIPHERLCA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCA10 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LCA10
DgiDB (Drug Gene Interaction Database)LCA10
DoCM (Curated mutations)LCA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCA10 (select a term)
intoGenLCA10
Cancer3DLCA10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLCA10
Genetic Testing Registry LCA10
NextProtQ71F78 [Medical]
TSGene100996465
GENETestsLCA10
Target ValidationLCA10
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100996465
BioCentury BCIQLCA10
ClinGenLCA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996465
Clinical trialLCA10
Miscellaneous
canSAR (ICR)LCA10 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCA10
EVEXLCA10
GoPubMedLCA10
iHOPLCA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:40:17 CEST 2017

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