Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LCAL1 (lung cancer associated lncRNA 1)

Identity

Alias_symbol (synonym)onco-lncRNA-27
Other alias
HGNC (Hugo) LCAL1
LocusID (NCBI) 80078
Atlas_Id 55374
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 79307669 and ends at 79313384 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCAL1   25837
Cards
Entrez_Gene (NCBI)LCAL1  80078  lung cancer associated lncRNA 1
Aliasesonco-lncRNA-27
GeneCards (Weizmann)LCAL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:79307669-79313384 [Contig_View]  LCAL1 [Vega]
TCGA cBioPortalLCAL1
AceView (NCBI)LCAL1
Genatlas (Paris)LCAL1
WikiGenes80078
SOURCE (Princeton)LCAL1
Genetics Home Reference (NIH)LCAL1
Genomic and cartography
GoldenPath hg38 (UCSC)LCAL1  -     chr6:79307669-79313384 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCAL1  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblLCAL1 - 6q14.1 [CytoView hg19]  LCAL1 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBILCAL1 [Mapview hg19]  LCAL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023806 BC070061
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCAL1
Gene ExpressionLCAL1 [ NCBI-GEO ]   LCAL1 [ EBI - ARRAY_EXPRESS ]   LCAL1 [ SEEK ]   LCAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LCAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)80078
GTEX Portal (Tissue expression)LCAL1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LCAL1
DMDM Disease mutations80078
Blocks (Seattle)LCAL1
IPIIPI00017425   
Protein Interaction databases
BioGRIDLCAL1
STRING (EMBL)LCAL1
ZODIACLCAL1
Ontologies - Pathways
Huge Navigator LCAL1 [HugePedia]
snp3D : Map Gene to Disease80078
BioCentury BCIQLCAL1
ClinGenLCAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80078
Clinical trialLCAL1
Miscellaneous
canSAR (ICR)LCAL1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCAL1
EVEXLCAL1
GoPubMedLCAL1
iHOPLCAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:32:52 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.