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LCE1A (late cornified envelope 1A)

Identity

Alias_symbol (synonym)LEP1
Other alias
HGNC (Hugo) LCE1A
LocusID (NCBI) 353131
Atlas_Id 65188
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152827473 and ends at 152828097 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE1A   29459
Cards
Entrez_Gene (NCBI)LCE1A  353131  late cornified envelope 1A
AliasesLEP1
GeneCards (Weizmann)LCE1A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:152827473-152828097 [Contig_View]  LCE1A [Vega]
TCGA cBioPortalLCE1A
AceView (NCBI)LCE1A
Genatlas (Paris)LCE1A
WikiGenes353131
SOURCE (Princeton)LCE1A
Genetics Home Reference (NIH)LCE1A
Genomic and cartography
GoldenPath hg38 (UCSC)LCE1A  -     chr1:152827473-152828097 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE1A  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE1A - 1q21.3 [CytoView hg19]  LCE1A - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE1A [Mapview hg19]  LCE1A [Mapview hg38]
OMIM612603   
Gene and transcription
Genbank (Entrez)BC146367 BC153155
RefSeq transcript (Entrez)NM_178348
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE1A
Cluster EST : UnigeneHs.534645 [ NCBI ]
CGAP (NCI)Hs.534645
Gene ExpressionLCE1A [ NCBI-GEO ]   LCE1A [ EBI - ARRAY_EXPRESS ]   LCE1A [ SEEK ]   LCE1A [ MEM ]
Gene Expression Viewer (FireBrowse)LCE1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353131
GTEX Portal (Tissue expression)LCE1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7P2
Splice isoforms : SwissVarQ5T7P2
PhosPhoSitePlusQ5T7P2
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE1A
DMDM Disease mutations353131
Blocks (Seattle)LCE1A
SuperfamilyQ5T7P2
Peptide AtlasQ5T7P2
HPRD13966
IPIIPI00374330   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7P2
IntAct (EBI)Q5T7P2
BioGRIDLCE1A
STRING (EMBL)LCE1A
ZODIACLCE1A
Ontologies - Pathways
QuickGOQ5T7P2
Ontology : AmiGOcornified envelope  structural molecule activity  cytoplasm  cytosol  peptide cross-linking  keratinocyte differentiation  cornification  
Ontology : EGO-EBIcornified envelope  structural molecule activity  cytoplasm  cytosol  peptide cross-linking  keratinocyte differentiation  cornification  
NDEx NetworkLCE1A
Atlas of Cancer Signalling NetworkLCE1A
Wikipedia pathwaysLCE1A
Orthology - Evolution
OrthoDB353131
Phylogenetic Trees/Animal Genes : TreeFamLCE1A
HOVERGENQ5T7P2
HOGENOMQ5T7P2
Homologs : HomoloGeneLCE1A
Homology/Alignments : Family Browser (UCSC)LCE1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE1A
dbVarLCE1A
ClinVarLCE1A
1000_GenomesLCE1A 
Exome Variant ServerLCE1A
ExAC (Exome Aggregation Consortium)LCE1A (select the gene name)
Genetic variants : HAPMAP353131
Genomic Variants (DGV)LCE1A [DGVbeta]
DECIPHERLCE1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE1A 
Mutations
ICGC Data PortalLCE1A 
TCGA Data PortalLCE1A 
Broad Tumor PortalLCE1A
OASIS PortalLCE1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE1A
DgiDB (Drug Gene Interaction Database)LCE1A
DoCM (Curated mutations)LCE1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE1A (select a term)
intoGenLCE1A
Cancer3DLCE1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612603   
Orphanet
MedgenLCE1A
Genetic Testing Registry LCE1A
NextProtQ5T7P2 [Medical]
TSGene353131
GENETestsLCE1A
Target ValidationLCE1A
Huge Navigator LCE1A [HugePedia]
snp3D : Map Gene to Disease353131
BioCentury BCIQLCE1A
ClinGenLCE1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353131
Chemical/Pharm GKB GenePA134885053
Clinical trialLCE1A
Miscellaneous
canSAR (ICR)LCE1A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE1A
EVEXLCE1A
GoPubMedLCE1A
iHOPLCE1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:36 CEST 2017

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