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LCE1B (late cornified envelope 1B)

Identity

Alias_namesSPRL2A
small proline rich-like (epidermal differentiation complex) 2A
Alias_symbol (synonym)LEP2
Other alias
HGNC (Hugo) LCE1B
LocusID (NCBI) 353132
Atlas_Id 65189
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152784447 and ends at 152785585 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE1B   16611
Cards
Entrez_Gene (NCBI)LCE1B  353132  late cornified envelope 1B
AliasesLEP2; SPRL2A
GeneCards (Weizmann)LCE1B
Ensembl hg19 (Hinxton)ENSG00000196734 [Gene_View]  chr1:152784447-152785585 [Contig_View]  LCE1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000196734 [Gene_View]  chr1:152784447-152785585 [Contig_View]  LCE1B [Vega]
ICGC DataPortalENSG00000196734
TCGA cBioPortalLCE1B
AceView (NCBI)LCE1B
Genatlas (Paris)LCE1B
WikiGenes353132
SOURCE (Princeton)LCE1B
Genetics Home Reference (NIH)LCE1B
Genomic and cartography
GoldenPath hg19 (UCSC)LCE1B  -     chr1:152784447-152785585 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LCE1B  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblLCE1B - 1q21.3 [CytoView hg19]  LCE1B - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE1B [Mapview hg19]  LCE1B [Mapview hg38]
OMIM612604   
Gene and transcription
Genbank (Entrez)BC031811 BC104232 BC104233 BC133657
RefSeq transcript (Entrez)NM_178349
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LCE1B
Cluster EST : UnigeneHs.375103 [ NCBI ]
CGAP (NCI)Hs.375103
Alternative Splicing GalleryENSG00000196734
Gene ExpressionLCE1B [ NCBI-GEO ]   LCE1B [ EBI - ARRAY_EXPRESS ]   LCE1B [ SEEK ]   LCE1B [ MEM ]
Gene Expression Viewer (FireBrowse)LCE1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353132
GTEX Portal (Tissue expression)LCE1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7P3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7P3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7P3
Splice isoforms : SwissVarQ5T7P3
PhosPhoSitePlusQ5T7P3
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE1B
DMDM Disease mutations353132
Blocks (Seattle)LCE1B
SuperfamilyQ5T7P3
Human Protein AtlasENSG00000196734
Peptide AtlasQ5T7P3
HPRD17259
IPIIPI00374331   IPI00943026   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7P3
IntAct (EBI)Q5T7P3
FunCoupENSG00000196734
BioGRIDLCE1B
STRING (EMBL)LCE1B
ZODIACLCE1B
Ontologies - Pathways
QuickGOQ5T7P3
Ontology : AmiGOprotein binding  keratinization  
Ontology : EGO-EBIprotein binding  keratinization  
NDEx NetworkLCE1B
Atlas of Cancer Signalling NetworkLCE1B
Wikipedia pathwaysLCE1B
Orthology - Evolution
OrthoDB353132
GeneTree (enSembl)ENSG00000196734
Phylogenetic Trees/Animal Genes : TreeFamLCE1B
HOVERGENQ5T7P3
HOGENOMQ5T7P3
Homologs : HomoloGeneLCE1B
Homology/Alignments : Family Browser (UCSC)LCE1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE1B
dbVarLCE1B
ClinVarLCE1B
1000_GenomesLCE1B 
Exome Variant ServerLCE1B
ExAC (Exome Aggregation Consortium)LCE1B (select the gene name)
Genetic variants : HAPMAP353132
Genomic Variants (DGV)LCE1B [DGVbeta]
DECIPHER (Syndromes)1:152784447-152785585  ENSG00000196734
CONAN: Copy Number AnalysisLCE1B 
Mutations
ICGC Data PortalLCE1B 
TCGA Data PortalLCE1B 
Broad Tumor PortalLCE1B
OASIS PortalLCE1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE1B
DgiDB (Drug Gene Interaction Database)LCE1B
DoCM (Curated mutations)LCE1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE1B (select a term)
intoGenLCE1B
Cancer3DLCE1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612604   
Orphanet
MedgenLCE1B
Genetic Testing Registry LCE1B
NextProtQ5T7P3 [Medical]
TSGene353132
GENETestsLCE1B
Huge Navigator LCE1B [HugePedia]
snp3D : Map Gene to Disease353132
BioCentury BCIQLCE1B
ClinGenLCE1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353132
Chemical/Pharm GKB GenePA38171
Clinical trialLCE1B
Miscellaneous
canSAR (ICR)LCE1B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE1B
EVEXLCE1B
GoPubMedLCE1B
iHOPLCE1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:49 CET 2017

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