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LCE1C (late cornified envelope 1C)

Identity

Alias_symbol (synonym)LEP3
Other alias
HGNC (Hugo) LCE1C
LocusID (NCBI) 353133
Atlas_Id 65190
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152777311 and ends at 152779107 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE1C   29464
Cards
Entrez_Gene (NCBI)LCE1C  353133  late cornified envelope 1C
AliasesLEP3
GeneCards (Weizmann)LCE1C
Ensembl hg19 (Hinxton) [Gene_View]  chr1:152777311-152779107 [Contig_View]  LCE1C [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:152777311-152779107 [Contig_View]  LCE1C [Vega]
TCGA cBioPortalLCE1C
AceView (NCBI)LCE1C
Genatlas (Paris)LCE1C
WikiGenes353133
SOURCE (Princeton)LCE1C
Genetics Home Reference (NIH)LCE1C
Genomic and cartography
GoldenPath hg19 (UCSC)LCE1C  -     chr1:152777311-152779107 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LCE1C  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblLCE1C - 1q21.3 [CytoView hg19]  LCE1C - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE1C [Mapview hg19]  LCE1C [Mapview hg38]
OMIM612605   
Gene and transcription
Genbank (Entrez)BC140394 BC146477
RefSeq transcript (Entrez)NM_001276331 NM_178351
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LCE1C
Cluster EST : UnigeneHs.660502 [ NCBI ]
CGAP (NCI)Hs.660502
Gene ExpressionLCE1C [ NCBI-GEO ]   LCE1C [ EBI - ARRAY_EXPRESS ]   LCE1C [ SEEK ]   LCE1C [ MEM ]
Gene Expression Viewer (FireBrowse)LCE1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353133
GTEX Portal (Tissue expression)LCE1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T751   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T751  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T751
Splice isoforms : SwissVarQ5T751
PhosPhoSitePlusQ5T751
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE1C
DMDM Disease mutations353133
Blocks (Seattle)LCE1C
SuperfamilyQ5T751
Peptide AtlasQ5T751
HPRD13967
IPIIPI00374332   
Protein Interaction databases
DIP (DOE-UCLA)Q5T751
IntAct (EBI)Q5T751
BioGRIDLCE1C
STRING (EMBL)LCE1C
ZODIACLCE1C
Ontologies - Pathways
QuickGOQ5T751
Ontology : AmiGOkeratinization  
Ontology : EGO-EBIkeratinization  
NDEx NetworkLCE1C
Atlas of Cancer Signalling NetworkLCE1C
Wikipedia pathwaysLCE1C
Orthology - Evolution
OrthoDB353133
Phylogenetic Trees/Animal Genes : TreeFamLCE1C
HOVERGENQ5T751
HOGENOMQ5T751
Homologs : HomoloGeneLCE1C
Homology/Alignments : Family Browser (UCSC)LCE1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE1C
dbVarLCE1C
ClinVarLCE1C
1000_GenomesLCE1C 
Exome Variant ServerLCE1C
ExAC (Exome Aggregation Consortium)LCE1C (select the gene name)
Genetic variants : HAPMAP353133
Genomic Variants (DGV)LCE1C [DGVbeta]
DECIPHER (Syndromes)1:152777311-152779107  
CONAN: Copy Number AnalysisLCE1C 
Mutations
ICGC Data PortalLCE1C 
TCGA Data PortalLCE1C 
Broad Tumor PortalLCE1C
OASIS PortalLCE1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE1C
DgiDB (Drug Gene Interaction Database)LCE1C
DoCM (Curated mutations)LCE1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE1C (select a term)
intoGenLCE1C
Cancer3DLCE1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612605   
Orphanet
MedgenLCE1C
Genetic Testing Registry LCE1C
NextProtQ5T751 [Medical]
TSGene353133
GENETestsLCE1C
Huge Navigator LCE1C [HugePedia]
snp3D : Map Gene to Disease353133
BioCentury BCIQLCE1C
ClinGenLCE1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353133
Chemical/Pharm GKB GenePA134895875
Clinical trialLCE1C
Miscellaneous
canSAR (ICR)LCE1C (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE1C
EVEXLCE1C
GoPubMedLCE1C
iHOPLCE1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:49 CET 2017

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