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LCE1D (late cornified envelope 1D)

Identity

Alias_symbol (synonym)LEP4
Other alias
HGNC (Hugo) LCE1D
LocusID (NCBI) 353134
Atlas_Id 65191
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152796751 and ends at 152798181 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE1D   29465
Cards
Entrez_Gene (NCBI)LCE1D  353134  late cornified envelope 1D
AliasesLEP4
GeneCards (Weizmann)LCE1D
Ensembl hg19 (Hinxton)ENSG00000172155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172155 [Gene_View]  chr1:152796751-152798181 [Contig_View]  LCE1D [Vega]
ICGC DataPortalENSG00000172155
TCGA cBioPortalLCE1D
AceView (NCBI)LCE1D
Genatlas (Paris)LCE1D
WikiGenes353134
SOURCE (Princeton)LCE1D
Genetics Home Reference (NIH)LCE1D
Genomic and cartography
GoldenPath hg38 (UCSC)LCE1D  -     chr1:152796751-152798181 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE1D  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE1D - 1q21.3 [CytoView hg19]  LCE1D - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE1D [Mapview hg19]  LCE1D [Mapview hg38]
OMIM612606   
Gene and transcription
Genbank (Entrez)BC160112 BG697954
RefSeq transcript (Entrez)NM_178352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE1D
Cluster EST : UnigeneHs.490235 [ NCBI ]
CGAP (NCI)Hs.490235
Alternative Splicing GalleryENSG00000172155
Gene ExpressionLCE1D [ NCBI-GEO ]   LCE1D [ EBI - ARRAY_EXPRESS ]   LCE1D [ SEEK ]   LCE1D [ MEM ]
Gene Expression Viewer (FireBrowse)LCE1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353134
GTEX Portal (Tissue expression)LCE1D
Human Protein AtlasENSG00000172155-LCE1D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T752   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T752  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T752
Splice isoforms : SwissVarQ5T752
PhosPhoSitePlusQ5T752
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE1D
DMDM Disease mutations353134
Blocks (Seattle)LCE1D
SuperfamilyQ5T752
Human Protein Atlas [tissue]ENSG00000172155-LCE1D [tissue]
Peptide AtlasQ5T752
HPRD13968
IPIIPI00374333   
Protein Interaction databases
DIP (DOE-UCLA)Q5T752
IntAct (EBI)Q5T752
FunCoupENSG00000172155
BioGRIDLCE1D
STRING (EMBL)LCE1D
ZODIACLCE1D
Ontologies - Pathways
QuickGOQ5T752
Ontology : AmiGOcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  perinuclear region of cytoplasm  cognition  cellular response to calcium ion  
Ontology : EGO-EBIcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  perinuclear region of cytoplasm  cognition  cellular response to calcium ion  
NDEx NetworkLCE1D
Atlas of Cancer Signalling NetworkLCE1D
Wikipedia pathwaysLCE1D
Orthology - Evolution
OrthoDB353134
GeneTree (enSembl)ENSG00000172155
Phylogenetic Trees/Animal Genes : TreeFamLCE1D
HOVERGENQ5T752
HOGENOMQ5T752
Homologs : HomoloGeneLCE1D
Homology/Alignments : Family Browser (UCSC)LCE1D
Gene fusions - Rearrangements
Fusion: Tumor Portal LCE1D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE1D
dbVarLCE1D
ClinVarLCE1D
1000_GenomesLCE1D 
Exome Variant ServerLCE1D
ExAC (Exome Aggregation Consortium)ENSG00000172155
GNOMAD BrowserENSG00000172155
Genetic variants : HAPMAP353134
Genomic Variants (DGV)LCE1D [DGVbeta]
DECIPHERLCE1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE1D 
Mutations
ICGC Data PortalLCE1D 
TCGA Data PortalLCE1D 
Broad Tumor PortalLCE1D
OASIS PortalLCE1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE1D
DgiDB (Drug Gene Interaction Database)LCE1D
DoCM (Curated mutations)LCE1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE1D (select a term)
intoGenLCE1D
Cancer3DLCE1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612606   
Orphanet
MedgenLCE1D
Genetic Testing Registry LCE1D
NextProtQ5T752 [Medical]
TSGene353134
GENETestsLCE1D
Target ValidationLCE1D
Huge Navigator LCE1D [HugePedia]
snp3D : Map Gene to Disease353134
BioCentury BCIQLCE1D
ClinGenLCE1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353134
Chemical/Pharm GKB GenePA134906518
Clinical trialLCE1D
Miscellaneous
canSAR (ICR)LCE1D (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE1D
EVEXLCE1D
GoPubMedLCE1D
iHOPLCE1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:25 CET 2017

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