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LCE1E (late cornified envelope 1E)

Identity

Alias_symbol (synonym)LEP5
Other alias
HGNC (Hugo) LCE1E
LocusID (NCBI) 353135
Atlas_Id 65192
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152758753 and ends at 152760901 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE1E   29466
Cards
Entrez_Gene (NCBI)LCE1E  353135  late cornified envelope 1E
AliasesLEP5
GeneCards (Weizmann)LCE1E
Ensembl hg19 (Hinxton)ENSG00000186226 [Gene_View]  chr1:152758753-152760901 [Contig_View]  LCE1E [Vega]
Ensembl hg38 (Hinxton)ENSG00000186226 [Gene_View]  chr1:152758753-152760901 [Contig_View]  LCE1E [Vega]
ICGC DataPortalENSG00000186226
TCGA cBioPortalLCE1E
AceView (NCBI)LCE1E
Genatlas (Paris)LCE1E
WikiGenes353135
SOURCE (Princeton)LCE1E
Genetics Home Reference (NIH)LCE1E
Genomic and cartography
GoldenPath hg19 (UCSC)LCE1E  -     chr1:152758753-152760901 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LCE1E  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblLCE1E - 1q21.3 [CytoView hg19]  LCE1E - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE1E [Mapview hg19]  LCE1E [Mapview hg38]
OMIM612607   
Gene and transcription
Genbank (Entrez)BC038391 BC160110
RefSeq transcript (Entrez)NM_178353
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LCE1E
Cluster EST : UnigeneHs.250236 [ NCBI ]
CGAP (NCI)Hs.250236
Alternative Splicing GalleryENSG00000186226
Gene ExpressionLCE1E [ NCBI-GEO ]   LCE1E [ EBI - ARRAY_EXPRESS ]   LCE1E [ SEEK ]   LCE1E [ MEM ]
Gene Expression Viewer (FireBrowse)LCE1E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353135
GTEX Portal (Tissue expression)LCE1E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T753   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T753  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T753
Splice isoforms : SwissVarQ5T753
PhosPhoSitePlusQ5T753
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE1E
DMDM Disease mutations353135
Blocks (Seattle)LCE1E
SuperfamilyQ5T753
Human Protein AtlasENSG00000186226
Peptide AtlasQ5T753
HPRD13969
IPIIPI00374334   
Protein Interaction databases
DIP (DOE-UCLA)Q5T753
IntAct (EBI)Q5T753
FunCoupENSG00000186226
BioGRIDLCE1E
STRING (EMBL)LCE1E
ZODIACLCE1E
Ontologies - Pathways
QuickGOQ5T753
Ontology : AmiGOkeratinization  
Ontology : EGO-EBIkeratinization  
NDEx NetworkLCE1E
Atlas of Cancer Signalling NetworkLCE1E
Wikipedia pathwaysLCE1E
Orthology - Evolution
OrthoDB353135
GeneTree (enSembl)ENSG00000186226
Phylogenetic Trees/Animal Genes : TreeFamLCE1E
HOVERGENQ5T753
HOGENOMQ5T753
Homologs : HomoloGeneLCE1E
Homology/Alignments : Family Browser (UCSC)LCE1E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE1E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE1E
dbVarLCE1E
ClinVarLCE1E
1000_GenomesLCE1E 
Exome Variant ServerLCE1E
ExAC (Exome Aggregation Consortium)LCE1E (select the gene name)
Genetic variants : HAPMAP353135
Genomic Variants (DGV)LCE1E [DGVbeta]
DECIPHER (Syndromes)1:152758753-152760901  ENSG00000186226
CONAN: Copy Number AnalysisLCE1E 
Mutations
ICGC Data PortalLCE1E 
TCGA Data PortalLCE1E 
Broad Tumor PortalLCE1E
OASIS PortalLCE1E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE1E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE1E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE1E
DgiDB (Drug Gene Interaction Database)LCE1E
DoCM (Curated mutations)LCE1E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE1E (select a term)
intoGenLCE1E
Cancer3DLCE1E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612607   
Orphanet
MedgenLCE1E
Genetic Testing Registry LCE1E
NextProtQ5T753 [Medical]
TSGene353135
GENETestsLCE1E
Huge Navigator LCE1E [HugePedia]
snp3D : Map Gene to Disease353135
BioCentury BCIQLCE1E
ClinGenLCE1E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353135
Chemical/Pharm GKB GenePA134866413
Clinical trialLCE1E
Miscellaneous
canSAR (ICR)LCE1E (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE1E
EVEXLCE1E
GoPubMedLCE1E
iHOPLCE1E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:49 CET 2017

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