Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LCE1F (late cornified envelope 1F)

Identity

Alias_symbol (synonym)LEP6
Other alias
HGNC (Hugo) LCE1F
LocusID (NCBI) 353137
Atlas_Id 65193
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152776372 and ends at 152776969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE1F   29467
Cards
Entrez_Gene (NCBI)LCE1F  353137  late cornified envelope 1F
AliasesLEP6
GeneCards (Weizmann)LCE1F
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:152776372-152776969 [Contig_View]  LCE1F [Vega]
TCGA cBioPortalLCE1F
AceView (NCBI)LCE1F
Genatlas (Paris)LCE1F
WikiGenes353137
SOURCE (Princeton)LCE1F
Genetics Home Reference (NIH)LCE1F
Genomic and cartography
GoldenPath hg38 (UCSC)LCE1F  -     chr1:152776372-152776969 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE1F  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE1F - 1q21.3 [CytoView hg19]  LCE1F - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE1F [Mapview hg19]  LCE1F [Mapview hg38]
OMIM612608   
Gene and transcription
Genbank (Entrez)AB463827 BC140330 BC146481
RefSeq transcript (Entrez)NM_178354
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE1F
Cluster EST : UnigeneHs.553712 [ NCBI ]
CGAP (NCI)Hs.553712
Gene ExpressionLCE1F [ NCBI-GEO ]   LCE1F [ EBI - ARRAY_EXPRESS ]   LCE1F [ SEEK ]   LCE1F [ MEM ]
Gene Expression Viewer (FireBrowse)LCE1F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353137
GTEX Portal (Tissue expression)LCE1F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T754   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T754  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T754
Splice isoforms : SwissVarQ5T754
PhosPhoSitePlusQ5T754
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE1F
DMDM Disease mutations353137
Blocks (Seattle)LCE1F
SuperfamilyQ5T754
Peptide AtlasQ5T754
HPRD13970
IPIIPI00374335   
Protein Interaction databases
DIP (DOE-UCLA)Q5T754
IntAct (EBI)Q5T754
BioGRIDLCE1F
STRING (EMBL)LCE1F
ZODIACLCE1F
Ontologies - Pathways
QuickGOQ5T754
Ontology : AmiGOcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkLCE1F
Atlas of Cancer Signalling NetworkLCE1F
Wikipedia pathwaysLCE1F
Orthology - Evolution
OrthoDB353137
Phylogenetic Trees/Animal Genes : TreeFamLCE1F
HOVERGENQ5T754
HOGENOMQ5T754
Homologs : HomoloGeneLCE1F
Homology/Alignments : Family Browser (UCSC)LCE1F
Gene fusions - Rearrangements
Tumor Fusion PortalLCE1F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE1F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE1F
dbVarLCE1F
ClinVarLCE1F
1000_GenomesLCE1F 
Exome Variant ServerLCE1F
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP353137
Genomic Variants (DGV)LCE1F [DGVbeta]
DECIPHERLCE1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE1F 
Mutations
ICGC Data PortalLCE1F 
TCGA Data PortalLCE1F 
Broad Tumor PortalLCE1F
OASIS PortalLCE1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE1F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE1F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE1F
DgiDB (Drug Gene Interaction Database)LCE1F
DoCM (Curated mutations)LCE1F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE1F (select a term)
intoGenLCE1F
Cancer3DLCE1F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612608   
Orphanet
DisGeNETLCE1F
MedgenLCE1F
Genetic Testing Registry LCE1F
NextProtQ5T754 [Medical]
TSGene353137
GENETestsLCE1F
Target ValidationLCE1F
Huge Navigator LCE1F [HugePedia]
snp3D : Map Gene to Disease353137
BioCentury BCIQLCE1F
ClinGenLCE1F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353137
Chemical/Pharm GKB GenePA134962947
Clinical trialLCE1F
Miscellaneous
canSAR (ICR)LCE1F (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE1F
EVEXLCE1F
GoPubMedLCE1F
iHOPLCE1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:36:02 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.