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LCE2A (late cornified envelope 2A)

Identity

Alias_symbol (synonym)LEP9
Other alias
HGNC (Hugo) LCE2A
LocusID (NCBI) 353139
Atlas_Id 65194
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152698364 and ends at 152699442 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE2A   29469
Cards
Entrez_Gene (NCBI)LCE2A  353139  late cornified envelope 2A
AliasesLEP9
GeneCards (Weizmann)LCE2A
Ensembl hg19 (Hinxton)ENSG00000187173 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187173 [Gene_View]  chr1:152698364-152699442 [Contig_View]  LCE2A [Vega]
ICGC DataPortalENSG00000187173
TCGA cBioPortalLCE2A
AceView (NCBI)LCE2A
Genatlas (Paris)LCE2A
WikiGenes353139
SOURCE (Princeton)LCE2A
Genetics Home Reference (NIH)LCE2A
Genomic and cartography
GoldenPath hg38 (UCSC)LCE2A  -     chr1:152698364-152699442 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE2A  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE2A - 1q21.3 [CytoView hg19]  LCE2A - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE2A [Mapview hg19]  LCE2A [Mapview hg38]
OMIM612609   
Gene and transcription
Genbank (Entrez)BC119707 BC127647 BG217525
RefSeq transcript (Entrez)NM_178428
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE2A
Cluster EST : UnigeneHs.334054 [ NCBI ]
CGAP (NCI)Hs.334054
Alternative Splicing GalleryENSG00000187173
Gene ExpressionLCE2A [ NCBI-GEO ]   LCE2A [ EBI - ARRAY_EXPRESS ]   LCE2A [ SEEK ]   LCE2A [ MEM ]
Gene Expression Viewer (FireBrowse)LCE2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353139
GTEX Portal (Tissue expression)LCE2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA79
Splice isoforms : SwissVarQ5TA79
PhosPhoSitePlusQ5TA79
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE2A
DMDM Disease mutations353139
Blocks (Seattle)LCE2A
SuperfamilyQ5TA79
Human Protein AtlasENSG00000187173
Peptide AtlasQ5TA79
HPRD13971
IPIIPI00374857   
Protein Interaction databases
DIP (DOE-UCLA)Q5TA79
IntAct (EBI)Q5TA79
FunCoupENSG00000187173
BioGRIDLCE2A
STRING (EMBL)LCE2A
ZODIACLCE2A
Ontologies - Pathways
QuickGOQ5TA79
Ontology : AmiGOcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkLCE2A
Atlas of Cancer Signalling NetworkLCE2A
Wikipedia pathwaysLCE2A
Orthology - Evolution
OrthoDB353139
GeneTree (enSembl)ENSG00000187173
Phylogenetic Trees/Animal Genes : TreeFamLCE2A
HOVERGENQ5TA79
HOGENOMQ5TA79
Homologs : HomoloGeneLCE2A
Homology/Alignments : Family Browser (UCSC)LCE2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE2A
dbVarLCE2A
ClinVarLCE2A
1000_GenomesLCE2A 
Exome Variant ServerLCE2A
ExAC (Exome Aggregation Consortium)LCE2A (select the gene name)
Genetic variants : HAPMAP353139
Genomic Variants (DGV)LCE2A [DGVbeta]
DECIPHERLCE2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE2A 
Mutations
ICGC Data PortalLCE2A 
TCGA Data PortalLCE2A 
Broad Tumor PortalLCE2A
OASIS PortalLCE2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE2A
DgiDB (Drug Gene Interaction Database)LCE2A
DoCM (Curated mutations)LCE2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE2A (select a term)
intoGenLCE2A
Cancer3DLCE2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612609   
Orphanet
MedgenLCE2A
Genetic Testing Registry LCE2A
NextProtQ5TA79 [Medical]
TSGene353139
GENETestsLCE2A
Target ValidationLCE2A
Huge Navigator LCE2A [HugePedia]
snp3D : Map Gene to Disease353139
BioCentury BCIQLCE2A
ClinGenLCE2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353139
Chemical/Pharm GKB GenePA134911274
Clinical trialLCE2A
Miscellaneous
canSAR (ICR)LCE2A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE2A
EVEXLCE2A
GoPubMedLCE2A
iHOPLCE2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:38 CEST 2017

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