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LCE2C (late cornified envelope 2C)

Identity

Alias_symbol (synonym)LEP11
Other alias
HGNC (Hugo) LCE2C
LocusID (NCBI) 353140
Atlas_Id 65196
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152647791 and ends at 152649049 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE2C   29460
Cards
Entrez_Gene (NCBI)LCE2C  353140  late cornified envelope 2C
AliasesLEP11
GeneCards (Weizmann)LCE2C
Ensembl hg19 (Hinxton)ENSG00000187180 [Gene_View]  chr1:152647791-152649049 [Contig_View]  LCE2C [Vega]
Ensembl hg38 (Hinxton)ENSG00000187180 [Gene_View]  chr1:152647791-152649049 [Contig_View]  LCE2C [Vega]
ICGC DataPortalENSG00000187180
TCGA cBioPortalLCE2C
AceView (NCBI)LCE2C
Genatlas (Paris)LCE2C
WikiGenes353140
SOURCE (Princeton)LCE2C
Genetics Home Reference (NIH)LCE2C
Genomic and cartography
GoldenPath hg19 (UCSC)LCE2C  -     chr1:152647791-152649049 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LCE2C  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblLCE2C - 1q21.3 [CytoView hg19]  LCE2C - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE2C [Mapview hg19]  LCE2C [Mapview hg38]
OMIM612611   
Gene and transcription
Genbank (Entrez)BC125197 BC160113
RefSeq transcript (Entrez)NM_178429
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LCE2C
Cluster EST : UnigeneHs.553713 [ NCBI ]
CGAP (NCI)Hs.553713
Alternative Splicing GalleryENSG00000187180
Gene ExpressionLCE2C [ NCBI-GEO ]   LCE2C [ EBI - ARRAY_EXPRESS ]   LCE2C [ SEEK ]   LCE2C [ MEM ]
Gene Expression Viewer (FireBrowse)LCE2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353140
GTEX Portal (Tissue expression)LCE2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA81
Splice isoforms : SwissVarQ5TA81
PhosPhoSitePlusQ5TA81
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE2C
DMDM Disease mutations353140
Blocks (Seattle)LCE2C
SuperfamilyQ5TA81
Human Protein AtlasENSG00000187180
Peptide AtlasQ5TA81
HPRD13972
IPIIPI00374858   
Protein Interaction databases
DIP (DOE-UCLA)Q5TA81
IntAct (EBI)Q5TA81
FunCoupENSG00000187180
BioGRIDLCE2C
STRING (EMBL)LCE2C
ZODIACLCE2C
Ontologies - Pathways
QuickGOQ5TA81
Ontology : AmiGOkeratinization  
Ontology : EGO-EBIkeratinization  
NDEx NetworkLCE2C
Atlas of Cancer Signalling NetworkLCE2C
Wikipedia pathwaysLCE2C
Orthology - Evolution
OrthoDB353140
GeneTree (enSembl)ENSG00000187180
Phylogenetic Trees/Animal Genes : TreeFamLCE2C
HOVERGENQ5TA81
HOGENOMQ5TA81
Homologs : HomoloGeneLCE2C
Homology/Alignments : Family Browser (UCSC)LCE2C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE2C
dbVarLCE2C
ClinVarLCE2C
1000_GenomesLCE2C 
Exome Variant ServerLCE2C
ExAC (Exome Aggregation Consortium)LCE2C (select the gene name)
Genetic variants : HAPMAP353140
Genomic Variants (DGV)LCE2C [DGVbeta]
DECIPHER (Syndromes)1:152647791-152649049  ENSG00000187180
CONAN: Copy Number AnalysisLCE2C 
Mutations
ICGC Data PortalLCE2C 
TCGA Data PortalLCE2C 
Broad Tumor PortalLCE2C
OASIS PortalLCE2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE2C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE2C
DgiDB (Drug Gene Interaction Database)LCE2C
DoCM (Curated mutations)LCE2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE2C (select a term)
intoGenLCE2C
Cancer3DLCE2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612611   
Orphanet
MedgenLCE2C
Genetic Testing Registry LCE2C
NextProtQ5TA81 [Medical]
TSGene353140
GENETestsLCE2C
Huge Navigator LCE2C [HugePedia]
snp3D : Map Gene to Disease353140
BioCentury BCIQLCE2C
ClinGenLCE2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353140
Chemical/Pharm GKB GenePA134903160
Clinical trialLCE2C
Miscellaneous
canSAR (ICR)LCE2C (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE2C
EVEXLCE2C
GoPubMedLCE2C
iHOPLCE2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:50 CET 2017

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