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LCE2D (late cornified envelope 2D)

Identity

Alias_namesSPRL1A
small proline rich-like (epidermal differentiation complex) 1A
Alias_symbol (synonym)LEP12
Other alias
HGNC (Hugo) LCE2D
LocusID (NCBI) 353141
Atlas_Id 65197
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152663411 and ends at 152664659 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE2D   16518
Cards
Entrez_Gene (NCBI)LCE2D  353141  late cornified envelope 2D
AliasesLEP12; SPRL1A
GeneCards (Weizmann)LCE2D
Ensembl hg19 (Hinxton)ENSG00000187223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187223 [Gene_View]  chr1:152663411-152664659 [Contig_View]  LCE2D [Vega]
ICGC DataPortalENSG00000187223
TCGA cBioPortalLCE2D
AceView (NCBI)LCE2D
Genatlas (Paris)LCE2D
WikiGenes353141
SOURCE (Princeton)LCE2D
Genetics Home Reference (NIH)LCE2D
Genomic and cartography
GoldenPath hg38 (UCSC)LCE2D  -     chr1:152663411-152664659 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE2D  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE2D - 1q21.3 [CytoView hg19]  LCE2D - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE2D [Mapview hg19]  LCE2D [Mapview hg38]
OMIM612612   
Gene and transcription
Genbank (Entrez)AW300079 BC130603 BC130605
RefSeq transcript (Entrez)NM_178430
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE2D
Cluster EST : UnigeneHs.490225 [ NCBI ]
CGAP (NCI)Hs.490225
Alternative Splicing GalleryENSG00000187223
Gene ExpressionLCE2D [ NCBI-GEO ]   LCE2D [ EBI - ARRAY_EXPRESS ]   LCE2D [ SEEK ]   LCE2D [ MEM ]
Gene Expression Viewer (FireBrowse)LCE2D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353141
GTEX Portal (Tissue expression)LCE2D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA82
Splice isoforms : SwissVarQ5TA82
PhosPhoSitePlusQ5TA82
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE2D
DMDM Disease mutations353141
Blocks (Seattle)LCE2D
SuperfamilyQ5TA82
Human Protein AtlasENSG00000187223
Peptide AtlasQ5TA82
HPRD17261
IPIIPI00374859   
Protein Interaction databases
DIP (DOE-UCLA)Q5TA82
IntAct (EBI)Q5TA82
FunCoupENSG00000187223
BioGRIDLCE2D
STRING (EMBL)LCE2D
ZODIACLCE2D
Ontologies - Pathways
QuickGOQ5TA82
Ontology : AmiGOcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkLCE2D
Atlas of Cancer Signalling NetworkLCE2D
Wikipedia pathwaysLCE2D
Orthology - Evolution
OrthoDB353141
GeneTree (enSembl)ENSG00000187223
Phylogenetic Trees/Animal Genes : TreeFamLCE2D
HOVERGENQ5TA82
HOGENOMQ5TA82
Homologs : HomoloGeneLCE2D
Homology/Alignments : Family Browser (UCSC)LCE2D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE2D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE2D
dbVarLCE2D
ClinVarLCE2D
1000_GenomesLCE2D 
Exome Variant ServerLCE2D
ExAC (Exome Aggregation Consortium)LCE2D (select the gene name)
Genetic variants : HAPMAP353141
Genomic Variants (DGV)LCE2D [DGVbeta]
DECIPHERLCE2D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE2D 
Mutations
ICGC Data PortalLCE2D 
TCGA Data PortalLCE2D 
Broad Tumor PortalLCE2D
OASIS PortalLCE2D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE2D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE2D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE2D
DgiDB (Drug Gene Interaction Database)LCE2D
DoCM (Curated mutations)LCE2D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE2D (select a term)
intoGenLCE2D
Cancer3DLCE2D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612612   
Orphanet
MedgenLCE2D
Genetic Testing Registry LCE2D
NextProtQ5TA82 [Medical]
TSGene353141
GENETestsLCE2D
Target ValidationLCE2D
Huge Navigator LCE2D [HugePedia]
snp3D : Map Gene to Disease353141
BioCentury BCIQLCE2D
ClinGenLCE2D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353141
Chemical/Pharm GKB GenePA38157
Clinical trialLCE2D
Miscellaneous
canSAR (ICR)LCE2D (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE2D
EVEXLCE2D
GoPubMedLCE2D
iHOPLCE2D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:38 CEST 2017

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