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LCE3A (late cornified envelope 3A)

Identity

Alias_symbol (synonym)LEP13
Other alias
HGNC (Hugo) LCE3A
LocusID (NCBI) 353142
Atlas_Id 65198
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152622834 and ends at 152623103 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE3A   29461
Cards
Entrez_Gene (NCBI)LCE3A  353142  late cornified envelope 3A
AliasesLEP13
GeneCards (Weizmann)LCE3A
Ensembl hg19 (Hinxton)ENSG00000185962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185962 [Gene_View]  chr1:152622834-152623103 [Contig_View]  LCE3A [Vega]
ICGC DataPortalENSG00000185962
TCGA cBioPortalLCE3A
AceView (NCBI)LCE3A
Genatlas (Paris)LCE3A
WikiGenes353142
SOURCE (Princeton)LCE3A
Genetics Home Reference (NIH)LCE3A
Genomic and cartography
GoldenPath hg38 (UCSC)LCE3A  -     chr1:152622834-152623103 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE3A  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE3A - 1q21.3 [CytoView hg19]  LCE3A - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE3A [Mapview hg19]  LCE3A [Mapview hg38]
OMIM612613   
Gene and transcription
Genbank (Entrez)AB528786 BC120933 BC120934 BC152957
RefSeq transcript (Entrez)NM_178431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE3A
Cluster EST : UnigeneHs.553714 [ NCBI ]
CGAP (NCI)Hs.553714
Alternative Splicing GalleryENSG00000185962
Gene ExpressionLCE3A [ NCBI-GEO ]   LCE3A [ EBI - ARRAY_EXPRESS ]   LCE3A [ SEEK ]   LCE3A [ MEM ]
Gene Expression Viewer (FireBrowse)LCE3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353142
GTEX Portal (Tissue expression)LCE3A
Human Protein AtlasENSG00000185962-LCE3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA76
Splice isoforms : SwissVarQ5TA76
PhosPhoSitePlusQ5TA76
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE3A
DMDM Disease mutations353142
Blocks (Seattle)LCE3A
SuperfamilyQ5TA76
Human Protein Atlas [tissue]ENSG00000185962-LCE3A [tissue]
Peptide AtlasQ5TA76
HPRD13973
IPIIPI00374860   
Protein Interaction databases
DIP (DOE-UCLA)Q5TA76
IntAct (EBI)Q5TA76
FunCoupENSG00000185962
BioGRIDLCE3A
STRING (EMBL)LCE3A
ZODIACLCE3A
Ontologies - Pathways
QuickGOQ5TA76
Ontology : AmiGOcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkLCE3A
Atlas of Cancer Signalling NetworkLCE3A
Wikipedia pathwaysLCE3A
Orthology - Evolution
OrthoDB353142
GeneTree (enSembl)ENSG00000185962
Phylogenetic Trees/Animal Genes : TreeFamLCE3A
HOVERGENQ5TA76
HOGENOMQ5TA76
Homologs : HomoloGeneLCE3A
Homology/Alignments : Family Browser (UCSC)LCE3A
Gene fusions - Rearrangements
Fusion: Tumor Portal LCE3A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE3A
dbVarLCE3A
ClinVarLCE3A
1000_GenomesLCE3A 
Exome Variant ServerLCE3A
ExAC (Exome Aggregation Consortium)ENSG00000185962
GNOMAD BrowserENSG00000185962
Genetic variants : HAPMAP353142
Genomic Variants (DGV)LCE3A [DGVbeta]
DECIPHERLCE3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE3A 
Mutations
ICGC Data PortalLCE3A 
TCGA Data PortalLCE3A 
Broad Tumor PortalLCE3A
OASIS PortalLCE3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE3A
DgiDB (Drug Gene Interaction Database)LCE3A
DoCM (Curated mutations)LCE3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE3A (select a term)
intoGenLCE3A
Cancer3DLCE3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612613   
Orphanet
MedgenLCE3A
Genetic Testing Registry LCE3A
NextProtQ5TA76 [Medical]
TSGene353142
GENETestsLCE3A
Target ValidationLCE3A
Huge Navigator LCE3A [HugePedia]
snp3D : Map Gene to Disease353142
BioCentury BCIQLCE3A
ClinGenLCE3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353142
Chemical/Pharm GKB GenePA134880553
Clinical trialLCE3A
Miscellaneous
canSAR (ICR)LCE3A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE3A
EVEXLCE3A
GoPubMedLCE3A
iHOPLCE3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:27 CET 2017

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