Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LCE3B (late cornified envelope 3B)

Identity

Alias_symbol (synonym)LEP14
Other alias
HGNC (Hugo) LCE3B
LocusID (NCBI) 353143
Atlas_Id 78428
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152613811 and ends at 152614098 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE3B   29462
Cards
Entrez_Gene (NCBI)LCE3B  353143  late cornified envelope 3B
AliasesLEP14
GeneCards (Weizmann)LCE3B
Ensembl hg19 (Hinxton)ENSG00000187238 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187238 [Gene_View]  chr1:152613811-152614098 [Contig_View]  LCE3B [Vega]
ICGC DataPortalENSG00000187238
TCGA cBioPortalLCE3B
AceView (NCBI)LCE3B
Genatlas (Paris)LCE3B
WikiGenes353143
SOURCE (Princeton)LCE3B
Genetics Home Reference (NIH)LCE3B
Genomic and cartography
GoldenPath hg38 (UCSC)LCE3B  -     chr1:152613811-152614098 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE3B  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE3B - 1q21.3 [CytoView hg19]  LCE3B - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE3B [Mapview hg19]  LCE3B [Mapview hg38]
OMIM612614   
Gene and transcription
Genbank (Entrez)BC160117
RefSeq transcript (Entrez)NM_178433
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE3B
Cluster EST : UnigeneHs.553715 [ NCBI ]
CGAP (NCI)Hs.553715
Alternative Splicing GalleryENSG00000187238
Gene ExpressionLCE3B [ NCBI-GEO ]   LCE3B [ EBI - ARRAY_EXPRESS ]   LCE3B [ SEEK ]   LCE3B [ MEM ]
Gene Expression Viewer (FireBrowse)LCE3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353143
GTEX Portal (Tissue expression)LCE3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA77
Splice isoforms : SwissVarQ5TA77
PhosPhoSitePlusQ5TA77
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE3B
DMDM Disease mutations353143
Blocks (Seattle)LCE3B
SuperfamilyQ5TA77
Human Protein AtlasENSG00000187238
Peptide AtlasQ5TA77
HPRD13974
IPIIPI00374864   
Protein Interaction databases
DIP (DOE-UCLA)Q5TA77
IntAct (EBI)Q5TA77
FunCoupENSG00000187238
BioGRIDLCE3B
STRING (EMBL)LCE3B
ZODIACLCE3B
Ontologies - Pathways
QuickGOQ5TA77
Ontology : AmiGOcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkLCE3B
Atlas of Cancer Signalling NetworkLCE3B
Wikipedia pathwaysLCE3B
Orthology - Evolution
OrthoDB353143
GeneTree (enSembl)ENSG00000187238
Phylogenetic Trees/Animal Genes : TreeFamLCE3B
HOVERGENQ5TA77
HOGENOMQ5TA77
Homologs : HomoloGeneLCE3B
Homology/Alignments : Family Browser (UCSC)LCE3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE3B [hg38]
dbSNP Syngle(N5cleotide Polymorphism (NCBI)LCE3B
dbVarLCE3B
ClinVarLCE3B
1000_GenomesLCE3B 
Exome Variant ServerLCE3B
ExAC (Exome Aggregation Consortium)LCE3B (select the gene name)
Genetic variants : HAPMAP353143
Genomic Variants (DGV)LCE3B [DGVbeta]
DECIPHERLCE3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE3B 
Mutations
ICGC Data PortalLCE3B 
TCGA Data PortalLCE3B 
Broad Tumor PortalLCE3B
OASIS PortalLCE3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE3B
DgiDB (Drug Gene Interaction Database)LCE3B
DoCM (Curated mutations)LCE3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE3B (select a term)
intoGenLCE3B
Cancer3DLCE3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612614   
Orphanet
MedgenLCE3B
Genetic Testing Registry LCE3B
NextProtQ5TA77 [Medical]
TSGene353143
GENETestsLCE3B
Target ValidationLCE3B
Huge Navigator LCE3B [HugePedia]
snp3D : Map Gene to Disease353143
BioCentury BCIQLCE3B
ClinGenLCE3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353143
Chemical/Pharm GKB GenePA134946555
Clinical trialLCE3B
Miscellaneous
canSAR (ICR)LCE3B (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE3B
EVEXLCE3B
GoPubMedLCE3B
iHOPLCE3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:12:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.