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LCE3C (late cornified envelope 3C)

Identity

Alias_namesSPRL3A
small proline rich-like (epidermal differentiation complex) 3A
Alias_symbol (synonym)LEP15
Other alias
HGNC (Hugo) LCE3C
LocusID (NCBI) 353144
Atlas_Id 65200
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152600662 and ends at 152601086 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE3C   16612
Cards
Entrez_Gene (NCBI)LCE3C  353144  late cornified envelope 3C
AliasesLEP15; SPRL3A
GeneCards (Weizmann)LCE3C
Ensembl hg19 (Hinxton)ENSG00000244057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244057 [Gene_View]  chr1:152600662-152601086 [Contig_View]  LCE3C [Vega]
ICGC DataPortalENSG00000244057
TCGA cBioPortalLCE3C
AceView (NCBI)LCE3C
Genatlas (Paris)LCE3C
WikiGenes353144
SOURCE (Princeton)LCE3C
Genetics Home Reference (NIH)LCE3C
Genomic and cartography
GoldenPath hg38 (UCSC)LCE3C  -     chr1:152600662-152601086 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE3C  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE3C - 1q21.3 [CytoView hg19]  LCE3C - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE3C [Mapview hg19]  LCE3C [Mapview hg38]
OMIM612615   
Gene and transcription
Genbank (Entrez)BC130365 BC130367 HQ258028
RefSeq transcript (Entrez)NM_178434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE3C
Cluster EST : UnigeneHs.490211 [ NCBI ]
CGAP (NCI)Hs.490211
Alternative Splicing GalleryENSG00000244057
Gene ExpressionLCE3C [ NCBI-GEO ]   LCE3C [ EBI - ARRAY_EXPRESS ]   LCE3C [ SEEK ]   LCE3C [ MEM ]
Gene Expression Viewer (FireBrowse)LCE3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353144
GTEX Portal (Tissue expression)LCE3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5A8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5A8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5A8
Splice isoforms : SwissVarQ5T5A8
PhosPhoSitePlusQ5T5A8
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE3C
DMDM Disease mutations353144
Blocks (Seattle)LCE3C
SuperfamilyQ5T5A8
Human Protein AtlasENSG00000244057
Peptide AtlasQ5T5A8
HPRD17262
IPIIPI00374865   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5A8
IntAct (EBI)Q5T5A8
FunCoupENSG00000244057
BioGRIDLCE3C
STRING (EMBL)LCE3C
ZODIACLCE3C
Ontologies - Pathways
QuickGOQ5T5A8
Ontology : AmiGOcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkLCE3C
Atlas of Cancer Signalling NetworkLCE3C
Wikipedia pathwaysLCE3C
Orthology - Evolution
OrthoDB353144
GeneTree (enSembl)ENSG00000244057
Phylogenetic Trees/Animal Genes : TreeFamLCE3C
HOVERGENQ5T5A8
HOGENOMQ5T5A8
Homologs : HomoloGeneLCE3C
Homology/Alignments : Family Browser (UCSC)LCE3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE3C
dbVarLCE3C
ClinVarLCE3C
1000_GenomesLCE3C 
Exome Variant ServerLCE3C
ExAC (Exome Aggregation Consortium)LCE3C (select the gene name)
Genetic variants : HAPMAP353144
Genomic Variants (DGV)LCE3C [DGVbeta]
DECIPHERLCE3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE3C 
Mutations
ICGC Data PortalLCE3C 
TCGA Data PortalLCE3C 
Broad Tumor PortalLCE3C
OASIS PortalLCE3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE3C
DgiDB (Drug Gene Interaction Database)LCE3C
DoCM (Curated mutations)LCE3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE3C (select a term)
intoGenLCE3C
Cancer3DLCE3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612615   
Orphanet
MedgenLCE3C
Genetic Testing Registry LCE3C
NextProtQ5T5A8 [Medical]
TSGene353144
GENETestsLCE3C
Target ValidationLCE3C
Huge Navigator LCE3C [HugePedia]
snp3D : Map Gene to Disease353144
BioCentury BCIQLCE3C
ClinGenLCE3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353144
Chemical/Pharm GKB GenePA38407
Clinical trialLCE3C
Miscellaneous
canSAR (ICR)LCE3C (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE3C
EVEXLCE3C
GoPubMedLCE3C
iHOPLCE3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:39 CEST 2017

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