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LCE3D (late cornified envelope 3D)

Identity

Alias_namesSPRL6B
SPRL6A
small proline rich-like (epidermal differentiation complex) 6B
Alias_symbol (synonym)LEP16
Other alias
HGNC (Hugo) LCE3D
LocusID (NCBI) 84648
Atlas_Id 65201
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152579384 and ends at 152580504 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE3D   16615
Cards
Entrez_Gene (NCBI)LCE3D  84648  late cornified envelope 3D
AliasesLEP16; SPRL6A; SPRL6B
GeneCards (Weizmann)LCE3D
Ensembl hg19 (Hinxton)ENSG00000163202 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163202 [Gene_View]  chr1:152579384-152580504 [Contig_View]  LCE3D [Vega]
ICGC DataPortalENSG00000163202
TCGA cBioPortalLCE3D
AceView (NCBI)LCE3D
Genatlas (Paris)LCE3D
WikiGenes84648
SOURCE (Princeton)LCE3D
Genetics Home Reference (NIH)LCE3D
Genomic and cartography
GoldenPath hg38 (UCSC)LCE3D  -     chr1:152579384-152580504 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE3D  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE3D - 1q21.3 [CytoView hg19]  LCE3D - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE3D [Mapview hg19]  LCE3D [Mapview hg38]
OMIM612616   
Gene and transcription
Genbank (Entrez)AB048288 BC069291 BC101784 BC120935 BC120936
RefSeq transcript (Entrez)NM_032563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE3D
Cluster EST : UnigeneHs.244349 [ NCBI ]
CGAP (NCI)Hs.244349
Alternative Splicing GalleryENSG00000163202
Gene ExpressionLCE3D [ NCBI-GEO ]   LCE3D [ EBI - ARRAY_EXPRESS ]   LCE3D [ SEEK ]   LCE3D [ MEM ]
Gene Expression Viewer (FireBrowse)LCE3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84648
GTEX Portal (Tissue expression)LCE3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYE3
Splice isoforms : SwissVarQ9BYE3
PhosPhoSitePlusQ9BYE3
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE3D
DMDM Disease mutations84648
Blocks (Seattle)LCE3D
SuperfamilyQ9BYE3
Human Protein AtlasENSG00000163202
Peptide AtlasQ9BYE3
HPRD17263
IPIIPI00749110   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYE3
IntAct (EBI)Q9BYE3
FunCoupENSG00000163202
BioGRIDLCE3D
STRING (EMBL)LCE3D
ZODIACLCE3D
Ontologies - Pathways
QuickGOQ9BYE3
Ontology : AmiGOcornified envelope  structural molecule activity  cytoplasm  cytosol  peptide cross-linking  keratinocyte differentiation  cornification  
Ontology : EGO-EBIcornified envelope  structural molecule activity  cytoplasm  cytosol  peptide cross-linking  keratinocyte differentiation  cornification  
NDEx NetworkLCE3D
Atlas of Cancer Signalling NetworkLCE3D
Wikipedia pathwaysLCE3D
Orthology - Evolution
OrthoDB84648
GeneTree (enSembl)ENSG00000163202
Phylogenetic Trees/Animal Genes : TreeFamLCE3D
HOVERGENQ9BYE3
HOGENOMQ9BYE3
Homologs : HomoloGeneLCE3D
Homology/Alignments : Family Browser (UCSC)LCE3D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE3D
dbVarLCE3D
ClinVarLCE3D
1000_GenomesLCE3D 
Exome Variant ServerLCE3D
ExAC (Exome Aggregation Consortium)LCE3D (select the gene name)
Genetic variants : HAPMAP84648
Genomic Variants (DGV)LCE3D [DGVbeta]
DECIPHERLCE3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE3D 
Mutations
ICGC Data PortalLCE3D 
TCGA Data PortalLCE3D 
Broad Tumor PortalLCE3D
OASIS PortalLCE3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE3D
DgiDB (Drug Gene Interaction Database)LCE3D
DoCM (Curated mutations)LCE3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE3D (select a term)
intoGenLCE3D
Cancer3DLCE3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612616   
Orphanet
MedgenLCE3D
Genetic Testing Registry LCE3D
NextProtQ9BYE3 [Medical]
TSGene84648
GENETestsLCE3D
Target ValidationLCE3D
Huge Navigator LCE3D [HugePedia]
snp3D : Map Gene to Disease84648
BioCentury BCIQLCE3D
ClinGenLCE3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84648
Chemical/Pharm GKB GenePA38174
Clinical trialLCE3D
Miscellaneous
canSAR (ICR)LCE3D (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE3D
EVEXLCE3D
GoPubMedLCE3D
iHOPLCE3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:34 CEST 2017

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