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LCE3E (late cornified envelope 3E)

Identity

Alias_symbol (synonym)LEP17
Other alias
HGNC (Hugo) LCE3E
LocusID (NCBI) 353145
Atlas_Id 65202
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152565699 and ends at 152566753 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE3E   29463
Cards
Entrez_Gene (NCBI)LCE3E  353145  late cornified envelope 3E
AliasesLEP17
GeneCards (Weizmann)LCE3E
Ensembl hg19 (Hinxton)ENSG00000185966 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185966 [Gene_View]  chr1:152565699-152566753 [Contig_View]  LCE3E [Vega]
ICGC DataPortalENSG00000185966
TCGA cBioPortalLCE3E
AceView (NCBI)LCE3E
Genatlas (Paris)LCE3E
WikiGenes353145
SOURCE (Princeton)LCE3E
Genetics Home Reference (NIH)LCE3E
Genomic and cartography
GoldenPath hg38 (UCSC)LCE3E  -     chr1:152565699-152566753 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE3E  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE3E - 1q21.3 [CytoView hg19]  LCE3E - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE3E [Mapview hg19]  LCE3E [Mapview hg38]
OMIM612617   
Gene and transcription
Genbank (Entrez)BC131716
RefSeq transcript (Entrez)NM_178435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE3E
Cluster EST : UnigeneHs.490208 [ NCBI ]
CGAP (NCI)Hs.490208
Alternative Splicing GalleryENSG00000185966
Gene ExpressionLCE3E [ NCBI-GEO ]   LCE3E [ EBI - ARRAY_EXPRESS ]   LCE3E [ SEEK ]   LCE3E [ MEM ]
Gene Expression Viewer (FireBrowse)LCE3E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353145
GTEX Portal (Tissue expression)LCE3E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5B0
Splice isoforms : SwissVarQ5T5B0
PhosPhoSitePlusQ5T5B0
Domains : Interpro (EBI)LCE    SPRR/LCE   
Domain families : Pfam (Sanger)LCE (PF14672)   
Domain families : Pfam (NCBI)pfam14672   
Conserved Domain (NCBI)LCE3E
DMDM Disease mutations353145
Blocks (Seattle)LCE3E
SuperfamilyQ5T5B0
Human Protein AtlasENSG00000185966
Peptide AtlasQ5T5B0
HPRD13975
IPIIPI00374867   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5B0
IntAct (EBI)Q5T5B0
FunCoupENSG00000185966
BioGRIDLCE3E
STRING (EMBL)LCE3E
ZODIACLCE3E
Ontologies - Pathways
QuickGOQ5T5B0
Ontology : AmiGOcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  protein binding  cytoplasm  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkLCE3E
Atlas of Cancer Signalling NetworkLCE3E
Wikipedia pathwaysLCE3E
Orthology - Evolution
OrthoDB353145
GeneTree (enSembl)ENSG00000185966
Phylogenetic Trees/Animal Genes : TreeFamLCE3E
HOVERGENQ5T5B0
HOGENOMQ5T5B0
Homologs : HomoloGeneLCE3E
Homology/Alignments : Family Browser (UCSC)LCE3E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE3E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE3E
dbVarLCE3E
ClinVarLCE3E
1000_GenomesLCE3E 
Exome Variant ServerLCE3E
ExAC (Exome Aggregation Consortium)LCE3E (select the gene name)
Genetic variants : HAPMAP353145
Genomic Variants (DGV)LCE3E [DGVbeta]
DECIPHERLCE3E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE3E 
Mutations
ICGC Data PortalLCE3E 
TCGA Data PortalLCE3E 
Broad Tumor PortalLCE3E
OASIS PortalLCE3E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE3E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE3E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE3E
DgiDB (Drug Gene Interaction Database)LCE3E
DoCM (Curated mutations)LCE3E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE3E (select a term)
intoGenLCE3E
Cancer3DLCE3E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612617   
Orphanet
MedgenLCE3E
Genetic Testing Registry LCE3E
NextProtQ5T5B0 [Medical]
TSGene353145
GENETestsLCE3E
Target ValidationLCE3E
Huge Navigator LCE3E [HugePedia]
snp3D : Map Gene to Disease353145
BioCentury BCIQLCE3E
ClinGenLCE3E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353145
Chemical/Pharm GKB GenePA134941153
Clinical trialLCE3E
Miscellaneous
canSAR (ICR)LCE3E (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE3E
EVEXLCE3E
GoPubMedLCE3E
iHOPLCE3E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:34 CEST 2017

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