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LCE6A (late cornified envelope 6A)

Identity

Alias_namesC1orf44
chromosome 1 open reading frame 44
Other alias
HGNC (Hugo) LCE6A
LocusID (NCBI) 448835
Atlas_Id 65205
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152842854 and ends at 152843983 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCE6A   31824
Cards
Entrez_Gene (NCBI)LCE6A  448835  late cornified envelope 6A
AliasesC1orf44
GeneCards (Weizmann)LCE6A
Ensembl hg19 (Hinxton)ENSG00000235942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235942 [Gene_View]  chr1:152842854-152843983 [Contig_View]  LCE6A [Vega]
ICGC DataPortalENSG00000235942
TCGA cBioPortalLCE6A
AceView (NCBI)LCE6A
Genatlas (Paris)LCE6A
WikiGenes448835
SOURCE (Princeton)LCE6A
Genetics Home Reference (NIH)LCE6A
Genomic and cartography
GoldenPath hg38 (UCSC)LCE6A  -     chr1:152842854-152843983 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCE6A  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblLCE6A - 1q21.3 [CytoView hg19]  LCE6A - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILCE6A [Mapview hg19]  LCE6A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG210316 DQ991251
RefSeq transcript (Entrez)NM_001128600
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCE6A
Cluster EST : UnigeneHs.62927 [ NCBI ]
CGAP (NCI)Hs.62927
Alternative Splicing GalleryENSG00000235942
Gene ExpressionLCE6A [ NCBI-GEO ]   LCE6A [ EBI - ARRAY_EXPRESS ]   LCE6A [ SEEK ]   LCE6A [ MEM ]
Gene Expression Viewer (FireBrowse)LCE6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)448835
GTEX Portal (Tissue expression)LCE6A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A183   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A183  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A183
Splice isoforms : SwissVarA0A183
PhosPhoSitePlusA0A183
Domains : Interpro (EBI)LCE6A   
Domain families : Pfam (Sanger)LCE6A (PF15858)   
Domain families : Pfam (NCBI)pfam15858   
Conserved Domain (NCBI)LCE6A
DMDM Disease mutations448835
Blocks (Seattle)LCE6A
SuperfamilyA0A183
Human Protein AtlasENSG00000235942
Peptide AtlasA0A183
IPIIPI00807623   
Protein Interaction databases
DIP (DOE-UCLA)A0A183
IntAct (EBI)A0A183
FunCoupENSG00000235942
BioGRIDLCE6A
STRING (EMBL)LCE6A
ZODIACLCE6A
Ontologies - Pathways
QuickGOA0A183
Ontology : AmiGOkeratinization  
Ontology : EGO-EBIkeratinization  
NDEx NetworkLCE6A
Atlas of Cancer Signalling NetworkLCE6A
Wikipedia pathwaysLCE6A
Orthology - Evolution
OrthoDB448835
GeneTree (enSembl)ENSG00000235942
Phylogenetic Trees/Animal Genes : TreeFamLCE6A
HOVERGENA0A183
HOGENOMA0A183
Homologs : HomoloGeneLCE6A
Homology/Alignments : Family Browser (UCSC)LCE6A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCE6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCE6A
dbVarLCE6A
ClinVarLCE6A
1000_GenomesLCE6A 
Exome Variant ServerLCE6A
ExAC (Exome Aggregation Consortium)LCE6A (select the gene name)
Genetic variants : HAPMAP448835
Genomic Variants (DGV)LCE6A [DGVbeta]
DECIPHERLCE6A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCE6A 
Mutations
ICGC Data PortalLCE6A 
TCGA Data PortalLCE6A 
Broad Tumor PortalLCE6A
OASIS PortalLCE6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCE6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCE6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCE6A
DgiDB (Drug Gene Interaction Database)LCE6A
DoCM (Curated mutations)LCE6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCE6A (select a term)
intoGenLCE6A
Cancer3DLCE6A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLCE6A
Genetic Testing Registry LCE6A
NextProtA0A183 [Medical]
TSGene448835
GENETestsLCE6A
Target ValidationLCE6A
Huge Navigator LCE6A [HugePedia]
snp3D : Map Gene to Disease448835
BioCentury BCIQLCE6A
ClinGenLCE6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD448835
Chemical/Pharm GKB GenePA162393834
Clinical trialLCE6A
Miscellaneous
canSAR (ICR)LCE6A (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCE6A
EVEXLCE6A
GoPubMedLCE6A
iHOPLCE6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:35 CEST 2017

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