LCMT2 (leucine carboxyl methyltransferase 2)

Identity

Other names	KIAA0547
	MGC9534
	PPM2
	TYW4
HGNC	LCMT2
Location	15q15.3
Location_base_pair	Starts at 41407266 and ends at 41410183 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	LCMT2   17558
Entrez_Gene	LCMT2  9836  leucine carboxyl methyltransferase 2
	Cards
GeneCards	LCMT2
Ensembl	LCMT2 [Search_View]   ENSG00000168806 [Gene_View]
Genatlas	LCMT2
GeneLynx	LCMT2
eGenome	LCMT2
euGene	9836
	Genomic and cartography
GoldenPath	LCMT2  -  15q15.3   chr15:41407266-41410183 -  15q15.3   [Description]    (hg18-March_2006)
Ensembl	LCMT2 - 15q15.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	LCMT2
	Gene and transcription
Genbank	AF265443 [ ENTREZ ]
Genbank	AK292587 [ ENTREZ ]
Genbank	AW505587 [ ENTREZ ]
Genbank	BC015949 [ ENTREZ ]
RefSeq	NM_014793 [ SRS ]    NM_014793 [ ENTREZ ]
RefSeq	AC_000058 [ SRS ]    AC_000058 [ ENTREZ ]
RefSeq	AC_000147 [ SRS ]    AC_000147 [ ENTREZ ]
RefSeq	NC_000015 [ SRS ]    NC_000015 [ ENTREZ ]
RefSeq	NT_010194 [ SRS ]    NT_010194 [ ENTREZ ]
RefSeq	NW_001838214 [ SRS ]    NW_001838214 [ ENTREZ ]
RefSeq	NW_925840 [ SRS ]    NW_925840 [ ENTREZ ]
AceView	LCMT2 AceView - NCBI
Unigene	Hs.200596 [ SRS ]    Hs.200596 [ NCBI ]     HS200596 [ spliceNest ]
Fast-db	3476 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O60294 [ SRS]    O60294 [ EXPASY ]     O60294 [ INTERPRO ]     O60294 [ UNIPROT ]
Interpro	IPR015915 Kelch-typ_b-propeller [ SRS ]    IPR015915 Kelch-typ_b-propeller [ EBI ]
Interpro	IPR011498 Kelch_2 [ SRS ]    IPR011498 Kelch_2 [ EBI ]
Interpro	IPR007213 LCM_MeTrfase [ SRS ]    IPR007213 LCM_MeTrfase [ EBI ]
CluSTr	O60294
Pfam	PF07646 Kelch_2 [ SRS ]    PF07646 Kelch_2 [ Sanger ]    pfam07646 [ NCBI-CDD ]
Pfam	PF04072 LCM [ SRS ]    PF04072 LCM [ Sanger ]    pfam04072 [ NCBI-CDD ]
Blocks	O60294
HPRD	17267
	Protein Interaction databases
DIP	O60294
IntAct	O60294
	Polymorphism : SNP, mutations, diseases
OMIM	611246    [ map ]
GENECLINICS	611246
SNP	LCMT2 [dbSNP-NCBI]
SNP	NM_014793 [SNP-NCI]
SNP	LCMT2 [GeneSNPs - Utah]  LCMT2] [HGBASE - SRS]
HAPMAP	LCMT2 [HAPMAP]
HGMD	LCMT2
	General knowledge
Family Browser	LCMT2 [UCSC Family Browser]
SOURCE	NM_014793
SMD	Hs.200596
SAGE	Hs.200596
Enzyme	2.1.1.- [ Enzyme-Expasy ]   2.1.1.- [ Enzyme-SRS ]   2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   2.1.1.- [ WIT ]
GO	protein binding [Amigo]  protein binding
GO	tRNA processing [Amigo]  tRNA processing
GO	methyltransferase activity [Amigo]  methyltransferase activity
GO	transferase activity [Amigo]  transferase activity
KEGG	Androgen and estrogen metabolism
KEGG	Histidine metabolism
KEGG	Tyrosine metabolism
KEGG	Tryptophan metabolism
KEGG	Aminophosphonate metabolism
KEGG	Selenoamino acid metabolism
KEGG	Nitrobenzene degradation
PubGene	LCMT2
TreeFam	LCMT2
CTD	9836 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	LCMT2 Related clones (RZPD - Berlin)
	PubMed
PubMed	10 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:48:21 2008