Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LCN10 (lipocalin 10)

Identity

Other alias-
HGNC (Hugo) LCN10
LocusID (NCBI) 414332
Atlas_Id 65209
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139632619 and ends at 139637411 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCN10   20892
Cards
Entrez_Gene (NCBI)LCN10  414332  lipocalin 10
Aliases
GeneCards (Weizmann)LCN10
Ensembl hg19 (Hinxton) [Gene_View]  chr9:139632619-139637411 [Contig_View]  LCN10 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:139632619-139637411 [Contig_View]  LCN10 [Vega]
TCGA cBioPortalLCN10
AceView (NCBI)LCN10
Genatlas (Paris)LCN10
WikiGenes414332
SOURCE (Princeton)LCN10
Genetics Home Reference (NIH)LCN10
Genomic and cartography
GoldenPath hg19 (UCSC)LCN10  -     chr9:139632619-139637411 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LCN10  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblLCN10 - 9q34.3 [CytoView hg19]  LCN10 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILCN10 [Mapview hg19]  LCN10 [Mapview hg38]
OMIM612904   
Gene and transcription
Genbank (Entrez)AK091788 AL832485 AY301271 BC036875 BC040963
RefSeq transcript (Entrez)NM_001001712
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)LCN10
Cluster EST : UnigeneHs.98132 [ NCBI ]
CGAP (NCI)Hs.98132
Gene ExpressionLCN10 [ NCBI-GEO ]   LCN10 [ EBI - ARRAY_EXPRESS ]   LCN10 [ SEEK ]   LCN10 [ MEM ]
Gene Expression Viewer (FireBrowse)LCN10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414332
GTEX Portal (Tissue expression)LCN10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6JVE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6JVE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6JVE6
Splice isoforms : SwissVarQ6JVE6
PhosPhoSitePlusQ6JVE6
Domaine pattern : Prosite (Expaxy)LIPOCALIN (PS00213)   
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocalin_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LCN10
DMDM Disease mutations414332
Blocks (Seattle)LCN10
SuperfamilyQ6JVE6
Peptide AtlasQ6JVE6
HPRD13977
IPIIPI00418885   IPI00847748   IPI00978753   IPI00922029   IPI00976340   IPI00984509   
Protein Interaction databases
DIP (DOE-UCLA)Q6JVE6
IntAct (EBI)Q6JVE6
BioGRIDLCN10
STRING (EMBL)LCN10
ZODIACLCN10
Ontologies - Pathways
QuickGOQ6JVE6
Ontology : AmiGOextracellular region  transport  
Ontology : EGO-EBIextracellular region  transport  
NDEx NetworkLCN10
Atlas of Cancer Signalling NetworkLCN10
Wikipedia pathwaysLCN10
Orthology - Evolution
OrthoDB414332
Phylogenetic Trees/Animal Genes : TreeFamLCN10
HOVERGENQ6JVE6
HOGENOMQ6JVE6
Homologs : HomoloGeneLCN10
Homology/Alignments : Family Browser (UCSC)LCN10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCN10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCN10
dbVarLCN10
ClinVarLCN10
1000_GenomesLCN10 
Exome Variant ServerLCN10
ExAC (Exome Aggregation Consortium)LCN10 (select the gene name)
Genetic variants : HAPMAP414332
Genomic Variants (DGV)LCN10 [DGVbeta]
DECIPHER (Syndromes)9:139632619-139637411  
CONAN: Copy Number AnalysisLCN10 
Mutations
ICGC Data PortalLCN10 
TCGA Data PortalLCN10 
Broad Tumor PortalLCN10
OASIS PortalLCN10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCN10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCN10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCN10
DgiDB (Drug Gene Interaction Database)LCN10
DoCM (Curated mutations)LCN10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCN10 (select a term)
intoGenLCN10
Cancer3DLCN10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612904   
Orphanet
MedgenLCN10
Genetic Testing Registry LCN10
NextProtQ6JVE6 [Medical]
TSGene414332
GENETestsLCN10
Huge Navigator LCN10 [HugePedia]
snp3D : Map Gene to Disease414332
BioCentury BCIQLCN10
ClinGenLCN10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414332
Chemical/Pharm GKB GenePA134942375
Clinical trialLCN10
Miscellaneous
canSAR (ICR)LCN10 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCN10
EVEXLCN10
GoPubMedLCN10
iHOPLCN10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:53 CET 2017

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