Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LCN12 (lipocalin 12)

Identity

Alias_symbol (synonym)MGC48935
Other alias-
HGNC (Hugo) LCN12
LocusID (NCBI) 286256
Atlas_Id 65210
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136952316 and ends at 136955497 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCN12   28733
Cards
Entrez_Gene (NCBI)LCN12  286256  lipocalin 12
Aliases
GeneCards (Weizmann)LCN12
Ensembl hg19 (Hinxton)ENSG00000184925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184925 [Gene_View]  chr9:136952316-136955497 [Contig_View]  LCN12 [Vega]
ICGC DataPortalENSG00000184925
TCGA cBioPortalLCN12
AceView (NCBI)LCN12
Genatlas (Paris)LCN12
WikiGenes286256
SOURCE (Princeton)LCN12
Genetics Home Reference (NIH)LCN12
Genomic and cartography
GoldenPath hg38 (UCSC)LCN12  -     chr9:136952316-136955497 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCN12  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLCN12 - 9q34.3 [CytoView hg19]  LCN12 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILCN12 [Mapview hg19]  LCN12 [Mapview hg38]
OMIM612905   
Gene and transcription
Genbank (Entrez)AI681012 AY301272 BC031600 BC041168 BX281250
RefSeq transcript (Entrez)NM_178536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCN12
Cluster EST : UnigeneHs.440519 [ NCBI ]
CGAP (NCI)Hs.440519
Alternative Splicing GalleryENSG00000184925
Gene ExpressionLCN12 [ NCBI-GEO ]   LCN12 [ EBI - ARRAY_EXPRESS ]   LCN12 [ SEEK ]   LCN12 [ MEM ]
Gene Expression Viewer (FireBrowse)LCN12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286256
GTEX Portal (Tissue expression)LCN12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6JVE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6JVE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6JVE5
Splice isoforms : SwissVarQ6JVE5
PhosPhoSitePlusQ6JVE5
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom    PstgldnD_synth   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)LCN12
DMDM Disease mutations286256
Blocks (Seattle)LCN12
SuperfamilyQ6JVE5
Human Protein AtlasENSG00000184925
Peptide AtlasQ6JVE5
HPRD13978
IPIIPI00791009   IPI00515026   
Protein Interaction databases
DIP (DOE-UCLA)Q6JVE5
IntAct (EBI)Q6JVE5
FunCoupENSG00000184925
BioGRIDLCN12
STRING (EMBL)LCN12
ZODIACLCN12
Ontologies - Pathways
QuickGOQ6JVE5
Ontology : AmiGOretinoic acid binding  transporter activity  extracellular region  lipid metabolic process  long-chain fatty acid transport  
Ontology : EGO-EBIretinoic acid binding  transporter activity  extracellular region  lipid metabolic process  long-chain fatty acid transport  
NDEx NetworkLCN12
Atlas of Cancer Signalling NetworkLCN12
Wikipedia pathwaysLCN12
Orthology - Evolution
OrthoDB286256
GeneTree (enSembl)ENSG00000184925
Phylogenetic Trees/Animal Genes : TreeFamLCN12
HOVERGENQ6JVE5
HOGENOMQ6JVE5
Homologs : HomoloGeneLCN12
Homology/Alignments : Family Browser (UCSC)LCN12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCN12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCN12
dbVarLCN12
ClinVarLCN12
1000_GenomesLCN12 
Exome Variant ServerLCN12
ExAC (Exome Aggregation Consortium)LCN12 (select the gene name)
Genetic variants : HAPMAP286256
Genomic Variants (DGV)LCN12 [DGVbeta]
DECIPHERLCN12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCN12 
Mutations
ICGC Data PortalLCN12 
TCGA Data PortalLCN12 
Broad Tumor PortalLCN12
OASIS PortalLCN12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCN12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCN12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCN12
DgiDB (Drug Gene Interaction Database)LCN12
DoCM (Curated mutations)LCN12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCN12 (select a term)
intoGenLCN12
Cancer3DLCN12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612905   
Orphanet
MedgenLCN12
Genetic Testing Registry LCN12
NextProtQ6JVE5 [Medical]
TSGene286256
GENETestsLCN12
Target ValidationLCN12
Huge Navigator LCN12 [HugePedia]
snp3D : Map Gene to Disease286256
BioCentury BCIQLCN12
ClinGenLCN12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286256
Chemical/Pharm GKB GenePA134959347
Clinical trialLCN12
Miscellaneous
canSAR (ICR)LCN12 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCN12
EVEXLCN12
GoPubMedLCN12
iHOPLCN12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:35 CEST 2017

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