Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LCN15 (lipocalin 15)

Identity

Alias_symbol (synonym)UNQ2541
PRO6093
Other alias
HGNC (Hugo) LCN15
LocusID (NCBI) 389812
Atlas_Id 65211
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136759634 and ends at 136764513 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCN15   33777
Cards
Entrez_Gene (NCBI)LCN15  389812  lipocalin 15
AliasesPRO6093; UNQ2541
GeneCards (Weizmann)LCN15
Ensembl hg19 (Hinxton)ENSG00000177984 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177984 [Gene_View]  chr9:136759634-136764513 [Contig_View]  LCN15 [Vega]
ICGC DataPortalENSG00000177984
TCGA cBioPortalLCN15
AceView (NCBI)LCN15
Genatlas (Paris)LCN15
WikiGenes389812
SOURCE (Princeton)LCN15
Genetics Home Reference (NIH)LCN15
Genomic and cartography
GoldenPath hg38 (UCSC)LCN15  -     chr9:136759634-136764513 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCN15  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLCN15 - 9q34.3 [CytoView hg19]  LCN15 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILCN15 [Mapview hg19]  LCN15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358618 BC035124 BC093893 BC093895
RefSeq transcript (Entrez)NM_203347
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCN15
Cluster EST : UnigeneHs.413902 [ NCBI ]
CGAP (NCI)Hs.413902
Alternative Splicing GalleryENSG00000177984
Gene ExpressionLCN15 [ NCBI-GEO ]   LCN15 [ EBI - ARRAY_EXPRESS ]   LCN15 [ SEEK ]   LCN15 [ MEM ]
Gene Expression Viewer (FireBrowse)LCN15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389812
GTEX Portal (Tissue expression)LCN15
Human Protein AtlasENSG00000177984-LCN15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWW0
Splice isoforms : SwissVarQ6UWW0
PhosPhoSitePlusQ6UWW0
Domaine pattern : Prosite (Expaxy)LIPOCALIN (PS00213)   
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocalin    Lipocalin_CS    Lipocln_cytosolic_FA-bd_dom    PstgldnD_synth   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)LCN15
DMDM Disease mutations389812
Blocks (Seattle)LCN15
PDB (SRS)2XST   
PDB (PDBSum)2XST   
PDB (IMB)2XST   
PDB (RSDB)2XST   
Structural Biology KnowledgeBase2XST   
SCOP (Structural Classification of Proteins)2XST   
CATH (Classification of proteins structures)2XST   
SuperfamilyQ6UWW0
Human Protein Atlas [tissue]ENSG00000177984-LCN15 [tissue]
Peptide AtlasQ6UWW0
HPRD15614
IPIIPI00399139   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWW0
IntAct (EBI)Q6UWW0
FunCoupENSG00000177984
BioGRIDLCN15
STRING (EMBL)LCN15
ZODIACLCN15
Ontologies - Pathways
QuickGOQ6UWW0
Ontology : AmiGOtransporter activity  extracellular region  lipid metabolic process  transport  small molecule binding  
Ontology : EGO-EBItransporter activity  extracellular region  lipid metabolic process  transport  small molecule binding  
NDEx NetworkLCN15
Atlas of Cancer Signalling NetworkLCN15
Wikipedia pathwaysLCN15
Orthology - Evolution
OrthoDB389812
GeneTree (enSembl)ENSG00000177984
Phylogenetic Trees/Animal Genes : TreeFamLCN15
HOVERGENQ6UWW0
HOGENOMQ6UWW0
Homologs : HomoloGeneLCN15
Homology/Alignments : Family Browser (UCSC)LCN15
Gene fusions - Rearrangements
Tumor Fusion PortalLCN15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCN15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCN15
dbVarLCN15
ClinVarLCN15
1000_GenomesLCN15 
Exome Variant ServerLCN15
ExAC (Exome Aggregation Consortium)ENSG00000177984
GNOMAD BrowserENSG00000177984
Genetic variants : HAPMAP389812
Genomic Variants (DGV)LCN15 [DGVbeta]
DECIPHERLCN15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCN15 
Mutations
ICGC Data PortalLCN15 
TCGA Data PortalLCN15 
Broad Tumor PortalLCN15
OASIS PortalLCN15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCN15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCN15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCN15
DgiDB (Drug Gene Interaction Database)LCN15
DoCM (Curated mutations)LCN15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCN15 (select a term)
intoGenLCN15
Cancer3DLCN15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLCN15
MedgenLCN15
Genetic Testing Registry LCN15
NextProtQ6UWW0 [Medical]
TSGene389812
GENETestsLCN15
Target ValidationLCN15
Huge Navigator LCN15 [HugePedia]
snp3D : Map Gene to Disease389812
BioCentury BCIQLCN15
ClinGenLCN15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389812
Chemical/Pharm GKB GenePA164722091
Clinical trialLCN15
Miscellaneous
canSAR (ICR)LCN15 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCN15
EVEXLCN15
GoPubMedLCN15
iHOPLCN15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:57 CET 2017

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