Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LCN6 (lipocalin 6)

Identity

Other aliasLCN5
UNQ643
hLcn5
HGNC (Hugo) LCN6
LocusID (NCBI) 158062
Atlas_Id 65212
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136744018 and ends at 136748528 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCN6   17337
Cards
Entrez_Gene (NCBI)LCN6  158062  lipocalin 6
AliasesLCN5; UNQ643; hLcn5
GeneCards (Weizmann)LCN6
Ensembl hg19 (Hinxton)ENSG00000267206 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267206 [Gene_View]  chr9:136744018-136748528 [Contig_View]  LCN6 [Vega]
ICGC DataPortalENSG00000267206
TCGA cBioPortalLCN6
AceView (NCBI)LCN6
Genatlas (Paris)LCN6
WikiGenes158062
SOURCE (Princeton)LCN6
Genetics Home Reference (NIH)LCN6
Genomic and cartography
GoldenPath hg38 (UCSC)LCN6  -     chr9:136744018-136748528 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCN6  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLCN6 - 9q34.3 [CytoView hg19]  LCN6 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILCN6 [Mapview hg19]  LCN6 [Mapview hg38]
OMIM609379   
Gene and transcription
Genbank (Entrez)AF303084 AY301269 AY358598 BC040937 BC062746
RefSeq transcript (Entrez)NM_198946
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCN6
Cluster EST : UnigeneHs.522504 [ NCBI ]
CGAP (NCI)Hs.522504
Alternative Splicing GalleryENSG00000267206
Gene ExpressionLCN6 [ NCBI-GEO ]   LCN6 [ EBI - ARRAY_EXPRESS ]   LCN6 [ SEEK ]   LCN6 [ MEM ]
Gene Expression Viewer (FireBrowse)LCN6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158062
GTEX Portal (Tissue expression)LCN6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62502   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62502  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62502
Splice isoforms : SwissVarP62502
PhosPhoSitePlusP62502
Domaine pattern : Prosite (Expaxy)LIPOCALIN (PS00213)   
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocalin_CS    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)LCN6
DMDM Disease mutations158062
Blocks (Seattle)LCN6
SuperfamilyP62502
Human Protein AtlasENSG00000267206
Peptide AtlasP62502
HPRD17268
IPIIPI00429327   IPI00877884   
Protein Interaction databases
DIP (DOE-UCLA)P62502
IntAct (EBI)P62502
FunCoupENSG00000267206
BioGRIDLCN6
STRING (EMBL)LCN6
ZODIACLCN6
Ontologies - Pathways
QuickGOP62502
Ontology : AmiGOextracellular region  single fertilization  
Ontology : EGO-EBIextracellular region  single fertilization  
NDEx NetworkLCN6
Atlas of Cancer Signalling NetworkLCN6
Wikipedia pathwaysLCN6
Orthology - Evolution
OrthoDB158062
GeneTree (enSembl)ENSG00000267206
Phylogenetic Trees/Animal Genes : TreeFamLCN6
HOVERGENP62502
HOGENOMP62502
Homologs : HomoloGeneLCN6
Homology/Alignments : Family Browser (UCSC)LCN6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCN6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCN6
dbVarLCN6
ClinVarLCN6
1000_GenomesLCN6 
Exome Variant ServerLCN6
ExAC (Exome Aggregation Consortium)LCN6 (select the gene name)
Genetic variants : HAPMAP158062
Genomic Variants (DGV)LCN6 [DGVbeta]
DECIPHERLCN6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCN6 
Mutations
ICGC Data PortalLCN6 
TCGA Data PortalLCN6 
Broad Tumor PortalLCN6
OASIS PortalLCN6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCN6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCN6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCN6
DgiDB (Drug Gene Interaction Database)LCN6
DoCM (Curated mutations)LCN6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCN6 (select a term)
intoGenLCN6
Cancer3DLCN6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609379   
Orphanet
MedgenLCN6
Genetic Testing Registry LCN6
NextProtP62502 [Medical]
TSGene158062
GENETestsLCN6
Target ValidationLCN6
Huge Navigator LCN6 [HugePedia]
snp3D : Map Gene to Disease158062
BioCentury BCIQLCN6
ClinGenLCN6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158062
Chemical/Pharm GKB GenePA30310
Clinical trialLCN6
Miscellaneous
canSAR (ICR)LCN6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCN6
EVEXLCN6
GoPubMedLCN6
iHOPLCN6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:19:04 CEST 2017

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