Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LCN8 (lipocalin 8)

Identity

Alias_namesLCN5
chromosome 9 open reading frame 137
lipocalin 5
Other aliasEP17
HGNC (Hugo) LCN8
LocusID (NCBI) 138307
Atlas_Id 65213
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136754388 and ends at 136758543 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCN8   27038
Cards
Entrez_Gene (NCBI)LCN8  138307  lipocalin 8
AliasesEP17; LCN5
GeneCards (Weizmann)LCN8
Ensembl hg19 (Hinxton)ENSG00000204001 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204001 [Gene_View]  chr9:136754388-136758543 [Contig_View]  LCN8 [Vega]
ICGC DataPortalENSG00000204001
TCGA cBioPortalLCN8
AceView (NCBI)LCN8
Genatlas (Paris)LCN8
WikiGenes138307
SOURCE (Princeton)LCN8
Genetics Home Reference (NIH)LCN8
Genomic and cartography
GoldenPath hg38 (UCSC)LCN8  -     chr9:136754388-136758543 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCN8  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLCN8 - 9q34.3 [CytoView hg19]  LCN8 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILCN8 [Mapview hg19]  LCN8 [Mapview hg38]
OMIM612902   
Gene and transcription
Genbank (Entrez)AK090647 AK124003 AK126902 AY301268 BC024235
RefSeq transcript (Entrez)NM_001345934 NM_178469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCN8
Cluster EST : UnigeneHs.323991 [ NCBI ]
CGAP (NCI)Hs.323991
Alternative Splicing GalleryENSG00000204001
Gene ExpressionLCN8 [ NCBI-GEO ]   LCN8 [ EBI - ARRAY_EXPRESS ]   LCN8 [ SEEK ]   LCN8 [ MEM ]
Gene Expression Viewer (FireBrowse)LCN8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138307
GTEX Portal (Tissue expression)LCN8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6JVE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6JVE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6JVE9
Splice isoforms : SwissVarQ6JVE9
PhosPhoSitePlusQ6JVE9
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)LCN8
DMDM Disease mutations138307
Blocks (Seattle)LCN8
SuperfamilyQ6JVE9
Human Protein AtlasENSG00000204001
Peptide AtlasQ6JVE9
HPRD18549
IPIIPI00418886   IPI00747217   IPI01018974   IPI00385882   
Protein Interaction databases
DIP (DOE-UCLA)Q6JVE9
IntAct (EBI)Q6JVE9
FunCoupENSG00000204001
BioGRIDLCN8
STRING (EMBL)LCN8
ZODIACLCN8
Ontologies - Pathways
QuickGOQ6JVE9
Ontology : AmiGOextracellular region  transport  response to hormone  
Ontology : EGO-EBIextracellular region  transport  response to hormone  
NDEx NetworkLCN8
Atlas of Cancer Signalling NetworkLCN8
Wikipedia pathwaysLCN8
Orthology - Evolution
OrthoDB138307
GeneTree (enSembl)ENSG00000204001
Phylogenetic Trees/Animal Genes : TreeFamLCN8
HOVERGENQ6JVE9
HOGENOMQ6JVE9
Homologs : HomoloGeneLCN8
Homology/Alignments : Family Browser (UCSC)LCN8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCN8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCN8
dbVarLCN8
ClinVarLCN8
1000_GenomesLCN8 
Exome Variant ServerLCN8
ExAC (Exome Aggregation Consortium)LCN8 (select the gene name)
Genetic variants : HAPMAP138307
Genomic Variants (DGV)LCN8 [DGVbeta]
DECIPHERLCN8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCN8 
Mutations
ICGC Data PortalLCN8 
TCGA Data PortalLCN8 
Broad Tumor PortalLCN8
OASIS PortalLCN8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCN8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCN8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCN8
DgiDB (Drug Gene Interaction Database)LCN8
DoCM (Curated mutations)LCN8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCN8 (select a term)
intoGenLCN8
Cancer3DLCN8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612902   
Orphanet
MedgenLCN8
Genetic Testing Registry LCN8
NextProtQ6JVE9 [Medical]
TSGene138307
GENETestsLCN8
Target ValidationLCN8
Huge Navigator LCN8 [HugePedia]
snp3D : Map Gene to Disease138307
BioCentury BCIQLCN8
ClinGenLCN8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138307
Chemical/Pharm GKB GenePA134958919
Clinical trialLCN8
Miscellaneous
canSAR (ICR)LCN8 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCN8
EVEXLCN8
GoPubMedLCN8
iHOPLCN8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:55:42 CEST 2017

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