Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LCN9 (lipocalin 9)

Identity

Other aliasHEL129
HGNC (Hugo) LCN9
LocusID (NCBI) 392399
Atlas_Id 65214
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 135663322 and ends at 135665909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCN9   17442
Cards
Entrez_Gene (NCBI)LCN9  392399  lipocalin 9
AliasesHEL129
GeneCards (Weizmann)LCN9
Ensembl hg19 (Hinxton)ENSG00000148386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148386 [Gene_View]  chr9:135663322-135665909 [Contig_View]  LCN9 [Vega]
ICGC DataPortalENSG00000148386
TCGA cBioPortalLCN9
AceView (NCBI)LCN9
Genatlas (Paris)LCN9
WikiGenes392399
SOURCE (Princeton)LCN9
Genetics Home Reference (NIH)LCN9
Genomic and cartography
GoldenPath hg38 (UCSC)LCN9  -     chr9:135663322-135665909 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCN9  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLCN9 - 9q34.3 [CytoView hg19]  LCN9 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILCN9 [Mapview hg19]  LCN9 [Mapview hg38]
OMIM612903   
Gene and transcription
Genbank (Entrez)AY301270 BC146405 BC148847 EU794679
RefSeq transcript (Entrez)NM_001001676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCN9
Cluster EST : UnigeneHs.532679 [ NCBI ]
CGAP (NCI)Hs.532679
Alternative Splicing GalleryENSG00000148386
Gene ExpressionLCN9 [ NCBI-GEO ]   LCN9 [ EBI - ARRAY_EXPRESS ]   LCN9 [ SEEK ]   LCN9 [ MEM ]
Gene Expression Viewer (FireBrowse)LCN9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392399
GTEX Portal (Tissue expression)LCN9
Human Protein AtlasENSG00000148386-LCN9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WX39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WX39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WX39
Splice isoforms : SwissVarQ8WX39
PhosPhoSitePlusQ8WX39
Domaine pattern : Prosite (Expaxy)LIPOCALIN (PS00213)   
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocalin_CS    Lipocln_cytosolic_FA-bd_dom    Maj_urinary   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)LCN9
DMDM Disease mutations392399
Blocks (Seattle)LCN9
SuperfamilyQ8WX39
Human Protein Atlas [tissue]ENSG00000148386-LCN9 [tissue]
Peptide AtlasQ8WX39
HPRD13979
IPIIPI00103425   
Protein Interaction databases
DIP (DOE-UCLA)Q8WX39
IntAct (EBI)Q8WX39
FunCoupENSG00000148386
BioGRIDLCN9
STRING (EMBL)LCN9
ZODIACLCN9
Ontologies - Pathways
QuickGOQ8WX39
Ontology : AmiGOtransporter activity  pheromone binding  extracellular region  transport  
Ontology : EGO-EBItransporter activity  pheromone binding  extracellular region  transport  
NDEx NetworkLCN9
Atlas of Cancer Signalling NetworkLCN9
Wikipedia pathwaysLCN9
Orthology - Evolution
OrthoDB392399
GeneTree (enSembl)ENSG00000148386
Phylogenetic Trees/Animal Genes : TreeFamLCN9
HOVERGENQ8WX39
HOGENOMQ8WX39
Homologs : HomoloGeneLCN9
Homology/Alignments : Family Browser (UCSC)LCN9
Gene fusions - Rearrangements
Tumor Fusion PortalLCN9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCN9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCN9
dbVarLCN9
ClinVarLCN9
1000_GenomesLCN9 
Exome Variant ServerLCN9
ExAC (Exome Aggregation Consortium)ENSG00000148386
GNOMAD BrowserENSG00000148386
Genetic variants : HAPMAP392399
Genomic Variants (DGV)LCN9 [DGVbeta]
DECIPHERLCN9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCN9 
Mutations
ICGC Data PortalLCN9 
TCGA Data PortalLCN9 
Broad Tumor PortalLCN9
OASIS PortalLCN9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCN9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCN9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCN9
DgiDB (Drug Gene Interaction Database)LCN9
DoCM (Curated mutations)LCN9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCN9 (select a term)
intoGenLCN9
Cancer3DLCN9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612903   
Orphanet
DisGeNETLCN9
MedgenLCN9
Genetic Testing Registry LCN9
NextProtQ8WX39 [Medical]
TSGene392399
GENETestsLCN9
Target ValidationLCN9
Huge Navigator LCN9 [HugePedia]
snp3D : Map Gene to Disease392399
BioCentury BCIQLCN9
ClinGenLCN9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392399
Chemical/Pharm GKB GenePA134879860
Clinical trialLCN9
Miscellaneous
canSAR (ICR)LCN9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCN9
EVEXLCN9
GoPubMedLCN9
iHOPLCN9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:57 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.