Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LCNL1 (lipocalin like 1)

Identity

Alias_symbol (synonym)FLJ45224
Other alias-
HGNC (Hugo) LCNL1
LocusID (NCBI) 401562
Atlas_Id 65215
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136982993 and ends at 136985758 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LCNL1   34436
Cards
Entrez_Gene (NCBI)LCNL1  401562  lipocalin like 1
Aliases
GeneCards (Weizmann)LCNL1
Ensembl hg19 (Hinxton)ENSG00000214402 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214402 [Gene_View]  chr9:136982993-136985758 [Contig_View]  LCNL1 [Vega]
ICGC DataPortalENSG00000214402
TCGA cBioPortalLCNL1
AceView (NCBI)LCNL1
Genatlas (Paris)LCNL1
WikiGenes401562
SOURCE (Princeton)LCNL1
Genetics Home Reference (NIH)LCNL1
Genomic and cartography
GoldenPath hg38 (UCSC)LCNL1  -     chr9:136982993-136985758 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LCNL1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblLCNL1 - 9q34.3 [CytoView hg19]  LCNL1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBILCNL1 [Mapview hg19]  LCNL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097466 AK127160 AK127236 BC042845 BC062468
RefSeq transcript (Entrez)NM_207510
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LCNL1
Cluster EST : UnigeneHs.695210 [ NCBI ]
CGAP (NCI)Hs.695210
Alternative Splicing GalleryENSG00000214402
Gene ExpressionLCNL1 [ NCBI-GEO ]   LCNL1 [ EBI - ARRAY_EXPRESS ]   LCNL1 [ SEEK ]   LCNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LCNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401562
GTEX Portal (Tissue expression)LCNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZST4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZST4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZST4
Splice isoforms : SwissVarQ6ZST4
PhosPhoSitePlusQ6ZST4
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)LCNL1
DMDM Disease mutations401562
Blocks (Seattle)LCNL1
SuperfamilyQ6ZST4
Human Protein AtlasENSG00000214402
Peptide AtlasQ6ZST4
HPRD16983
IPIIPI00418911   IPI00903224   IPI00945813   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZST4
IntAct (EBI)Q6ZST4
FunCoupENSG00000214402
BioGRIDLCNL1
STRING (EMBL)LCNL1
ZODIACLCNL1
Ontologies - Pathways
QuickGOQ6ZST4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLCNL1
Atlas of Cancer Signalling NetworkLCNL1
Wikipedia pathwaysLCNL1
Orthology - Evolution
OrthoDB401562
GeneTree (enSembl)ENSG00000214402
Phylogenetic Trees/Animal Genes : TreeFamLCNL1
HOVERGENQ6ZST4
HOGENOMQ6ZST4
Homologs : HomoloGeneLCNL1
Homology/Alignments : Family Browser (UCSC)LCNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLCNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LCNL1
dbVarLCNL1
ClinVarLCNL1
1000_GenomesLCNL1 
Exome Variant ServerLCNL1
ExAC (Exome Aggregation Consortium)LCNL1 (select the gene name)
Genetic variants : HAPMAP401562
Genomic Variants (DGV)LCNL1 [DGVbeta]
DECIPHERLCNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLCNL1 
Mutations
ICGC Data PortalLCNL1 
TCGA Data PortalLCNL1 
Broad Tumor PortalLCNL1
OASIS PortalLCNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLCNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLCNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LCNL1
DgiDB (Drug Gene Interaction Database)LCNL1
DoCM (Curated mutations)LCNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LCNL1 (select a term)
intoGenLCNL1
Cancer3DLCNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLCNL1
Genetic Testing Registry LCNL1
NextProtQ6ZST4 [Medical]
TSGene401562
GENETestsLCNL1
Target ValidationLCNL1
Huge Navigator LCNL1 [HugePedia]
snp3D : Map Gene to Disease401562
BioCentury BCIQLCNL1
ClinGenLCNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401562
Chemical/Pharm GKB GenePA164722092
Clinical trialLCNL1
Miscellaneous
canSAR (ICR)LCNL1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLCNL1
EVEXLCNL1
GoPubMedLCNL1
iHOPLCNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:55:42 CEST 2017

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