Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LCOR (ligand dependent nuclear receptor corepressor)

Identity

Other namesMLR2
HGNC (Hugo) LCOR
LocusID (NCBI) 84458
Location 10q24.1
Location_base_pair Starts at 98592017 and ends at 98724198 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)LCOR   29503
Entrez_Gene (NCBI)LCOR  84458  ligand dependent nuclear receptor corepressor
Cards
GeneCards (Weizmann)LCOR
Ensembl (Hinxton)ENSG00000196233 [Gene_View]  chr10:98592017-98724198 [Contig_View]  LCOR [Vega]
AceView (NCBI)LCOR
Genatlas (Paris)LCOR
SOURCE (Stanford)NM_001170765 NM_001170766 NM_032440
Genomic and cartography
GoldenPath (UCSC)LCOR  -  10q24.1   chr10:98592017-98724198 +  10q24.1   [Description]    (hg19-Feb_2009)
EnsemblLCOR - 10q24.1 [CytoView]
Mapping of homologs : NCBILCOR [Mapview]
OMIM607698   
Gene and transcription
Genbank (Entrez)AB058698 AB072899 AK023248 AK095345 AL832044
RefSeq transcript (SRS)NM_001170765 NM_001170766 NM_032440
RefSeq transcript (Entrez)NM_001170765 NM_001170766 NM_032440
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838005 NW_004078068
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838005 NW_004078068
Consensus coding sequences : CCDS (NCBI)LCOR
Cluster EST : UnigeneHs.644719 [ SRS ] Hs.644719 [ NCBI ]
CGAP (NCI)Hs.644719
Alternative Splicing : Fast-db (Paris)GSHG0003590
Alternative Splicing GalleryENSG00000196233
Gene ExpressionLCOR [ NCBI-GEO ]   LCOR [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JN0 (SRS) Q96JN0 (Uniprot)
NextProtQ96JN0
With graphics : InterProQ96JN0
Splice isoforms : SwissVarQ96JN0(Swissvar)
Domaine pattern : Prosite (SRS)HTH_PSQ (PS50960)   
Domaine pattern : Prosite (Expaxy)HTH_PSQ (PS50960)   
Domains : Interpro (SRS)Homeodomain-like    HTH_Psq   
Domains : Interpro (EBI)Homeodomain-like    HTH_Psq   
Related proteins : CluSTrQ96JN0
Domain families : Pfam (SRS)HTH_psq (PF05225)   
Domain families : Pfam (Sanger)HTH_psq (PF05225)   
Domain families : Pfam (NCBI)pfam05225   
DMDM84458
Blocks (Seattle)Q96JN0
PDB (SRS)2COB   
PDB (PDBSum)2COB   
PDB (IMB)2COB   
PDB (RSDB)2COB   
Human Protein AtlasENSG00000196233
HPRD07609
IPIIPI00478371   IPI00759763   
Protein Interaction databases
DIP (DOE-UCLA)Q96JN0
IntAct (EBI)Q96JN0
FunCoupENSG00000196233
REACTOMELCOR
Protein Interaction Database84458
BioGRIDLCOR
InParanoidQ96JN0
Interologous Interaction database Q96JN0
IntegromeDBLCOR
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LCOR
SNP (GeneSNP Utah)LCOR
SNP : HGBaseLCOR
Genetic variants : HAPMAPLCOR
Somatic Mutations in Cancer : COSMICLCOR 
CONAN: Copy Number AnalysisLCOR 
Mutations and Diseases : HGMDLCOR
OMIM607698   
GENETests607698   
Disease Genetic AssociationLCOR
Huge Navigator LCOR [HugePedia]  LCOR [HugeCancerGEM]
Genomic VariantsLCOR  LCOR [DGVbeta]
snp3D : Map Gene to Disease84458
General knowledge
Homologs : HomoloGeneLCOR
Homology/Alignments : Family Browser (UCSC)LCOR
Phylogenetic Trees/Animal Genes : TreeFamLCOR
Chemical/Protein Interactions : CTD84458
Chemical/Pharm GKB GenePA145148487
Clinical trialLCOR
Cancer Resource (Charite)ENSG00000196233
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription from RNA polymerase II promoter  transcription factor binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription from RNA polymerase II promoter  transcription factor binding  
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGeneLCOR
iHOPLCOR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:49:16 CEST 2013
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