Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LDAH (lipid droplet associated hydrolase)

Identity

Alias (NCBI)C2orf43
hLDAH
HGNC (Hugo) LDAH
HGNC Alias symbFLJ21820
HGNC Previous nameC2orf43
HGNC Previous namechromosome 2 open reading frame 43
LocusID (NCBI) 60526
Atlas_Id 53125
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 20684031 and ends at 20823101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LDAH (2p24.1)::RTN4 (2p16.1)MALAT1 (11q13.1)::LDAH (2p24.1)PARP8 (5q11.1)::LDAH (2p24.1)
PKNOX2 (11q24.2)::LDAH (2p24.1)PUM2 (2p24.1)::LDAH (2p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LDAH   26145
Cards
Entrez_Gene (NCBI)LDAH    lipid droplet associated hydrolase
AliasesC2orf43; hLDAH
GeneCards (Weizmann)LDAH
Ensembl hg19 (Hinxton)ENSG00000118961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118961 [Gene_View]  ENSG00000118961 [Sequence]  chr2:20684031-20823101 [Contig_View]  LDAH [Vega]
ICGC DataPortalENSG00000118961
TCGA cBioPortalLDAH
AceView (NCBI)LDAH
Genatlas (Paris)LDAH
SOURCE (Princeton)LDAH
Genetics Home Reference (NIH)LDAH
Genomic and cartography
GoldenPath hg38 (UCSC)LDAH  -     chr2:20684031-20823101 -  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LDAH  -     2p24.1   [Description]    (hg19-Feb_2009)
GoldenPathLDAH - 2p24.1 [CytoView hg19]  LDAH - 2p24.1 [CytoView hg38]
ImmunoBaseENSG00000118961
Genome Data Viewer NCBILDAH [Mapview hg19]  
OMIM613570   
Gene and transcription
Genbank (Entrez)AK021672 AK025473 AK299244 AK299555 AK300494
RefSeq transcript (Entrez)NM_001282719 NM_001282720 NM_001282721 NM_001282722 NM_001282723 NM_001282724 NM_021925
Consensus coding sequences : CCDS (NCBI)LDAH
Gene ExpressionLDAH [ NCBI-GEO ]   LDAH [ EBI - ARRAY_EXPRESS ]   LDAH [ SEEK ]   LDAH [ MEM ]
Gene Expression Viewer (FireBrowse)LDAH [ Firebrowse - Broad ]
GenevisibleExpression of LDAH in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60526
GTEX Portal (Tissue expression)LDAH
Human Protein AtlasENSG00000118961-LDAH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6V9
PhosPhoSitePlusQ9H6V9
Domaine pattern : Prosite (Expaxy)LIPASE_SER (PS00120)   
Domains : Interpro (EBI)AB_hydrolase    LDAH   
Domain families : Pfam (Sanger)LIDHydrolase (PF10230)   
Domain families : Pfam (NCBI)pfam10230   
Conserved Domain (NCBI)LDAH
SuperfamilyQ9H6V9
AlphaFold pdb e-kbQ9H6V9   
Human Protein Atlas [tissue]ENSG00000118961-LDAH [tissue]
HPRD07113
Protein Interaction databases
DIP (DOE-UCLA)Q9H6V9
IntAct (EBI)Q9H6V9
BioGRIDLDAH
STRING (EMBL)LDAH
ZODIACLDAH
Ontologies - Pathways
QuickGOQ9H6V9
Ontology : AmiGOendoplasmic reticulum  lipid droplet  lipid droplet  lipid catabolic process  lipase activity  lipid storage  
Ontology : EGO-EBIendoplasmic reticulum  lipid droplet  lipid droplet  lipid catabolic process  lipase activity  lipid storage  
NDEx NetworkLDAH
Atlas of Cancer Signalling NetworkLDAH
Wikipedia pathwaysLDAH
Orthology - Evolution
OrthoDB60526
GeneTree (enSembl)ENSG00000118961
Phylogenetic Trees/Animal Genes : TreeFamLDAH
Homologs : HomoloGeneLDAH
Homology/Alignments : Family Browser (UCSC)LDAH
Gene fusions - Rearrangements
Fusion : MitelmanLDAH::RTN4 [2p24.1/2p16.1]  
Fusion : MitelmanPUM2::LDAH [2p24.1/2p24.1]  
Fusion : QuiverLDAH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLDAH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LDAH
dbVarLDAH
ClinVarLDAH
MonarchLDAH
1000_GenomesLDAH 
Exome Variant ServerLDAH
GNOMAD BrowserENSG00000118961
Varsome BrowserLDAH
ACMGLDAH variants
VarityQ9H6V9
Genomic Variants (DGV)LDAH [DGVbeta]
DECIPHERLDAH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLDAH 
Mutations
ICGC Data PortalLDAH 
TCGA Data PortalLDAH 
Broad Tumor PortalLDAH
OASIS PortalLDAH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLDAH  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLDAH
Mutations and Diseases : HGMDLDAH
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLDAH
DgiDB (Drug Gene Interaction Database)LDAH
DoCM (Curated mutations)LDAH
CIViC (Clinical Interpretations of Variants in Cancer)LDAH
Cancer3DLDAH
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613570   
Orphanet
DisGeNETLDAH
MedgenLDAH
Genetic Testing Registry LDAH
NextProtQ9H6V9 [Medical]
GENETestsLDAH
Target ValidationLDAH
Huge Navigator LDAH [HugePedia]
ClinGenLDAH
Clinical trials, drugs, therapy
MyCancerGenomeLDAH
Protein Interactions : CTDLDAH
Pharm GKB GenePA147358698
PharosQ9H6V9
Clinical trialLDAH
Miscellaneous
canSAR (ICR)LDAH
HarmonizomeLDAH
ARCHS4LDAH
DataMed IndexLDAH
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLDAH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 20 12:40:33 CET 2022

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.